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The map label for this gene is sufD [C]

Identifier: 78778458

GI number: 78778458

Start: 77350

End: 78567

Strand: Reverse

Name: sufD [C]

Synonym: PMT9312_0073

Alternate gene names: 78778458

Gene position: 78567-77350 (Counterclockwise)

Preceding gene: 78778459

Following gene: 78778457

Centisome position: 4.6

GC content: 27.18

Gene sequence:

>1218_bases
ATGGAAATTATTGAAAAAATAAAAACCAATAAATTAATTGATAATCCAACAGAAATACAAAAAATCTGTCTTCATAAATT
ACAATCAAACCCTCTCCCTAATCCTAAAAGTGAAATATGGAGACTATCAAACAAATCAAAATTATCAAACTTCTTAGACT
ACTCAGTCAATGAAAAAGATCAAAAATCTCTTATATCATATCCTTATAGTTCTCAAAATATTATTAGATTAACAATTGGT
GAGAATAGCCAAATTTCATTGATAGAAAAAAATTATTCAATACAGCAATTGAGTAAAGATAAATTAGATAAATTCATAAA
GCAACAGATATCTTGTTTTGATCAAAATGAACATTGGAGTGACCTCCTAAATCTTTCTTTAAGTTGTGACAAGAATATCT
TGGGATTAAAAATAAACGGATCCAAAATTCCTCCTATTGAAATCTTTAGTCATGCATCAAGTAATTCTTTAAAGGCAAAA
ACCCTAGTAATATTTTTAGAAAAAAATTGTGATATTGAATTATTACAAGTAAATCTTGGTGTAGAAAACTCTGCATTATC
TCAATCAACATTCTTTTTTTTAGAAGAAAATAGTTCTGTAACTCATGGTGTTGTGTCATATGGTGAAAACAAATCAAATC
TAGTTAATTCTCTCAATGTAATTCAACAAAAAAATAGTAAATACAACTTAGGTTCTTTACATTTCAAATTTAATTATGCA
AGATTTGAAATTCATATAAAACAATCTGCAGGAAATGCTAAAACCAATATCAAAGGTATGCAAGTAACAAAAAACGATGA
ACAAATTTCTACTCATACAAAAATATACTTTAATGGTCCAAATGGATTTTTAGATCAAATCAACAAATCTCTTGCTGACG
ATAAATCACATGCAATATTTGAGGGTTCAATTATTGTTCCAAAAATTGCCCAGAAAACTGATGCTTCTCAATTAAGCAGA
AATTTACTTTTATCAAATCTCGCACAAATAGATACCAAACCTCAATTAGAAATAATTGCTGATGATGTCAAATGCAAACA
TGGAGCTACAATTTCACAATTAAATGAAGAAGAACTTTTTTATATGAGAGCAAGAGGTATCACATTAAAAGAAGCCAGTA
AACTACAATTAAGTTCTTACTTTCAAGAAATAATTTCATTTATTCCCGTTGTAAAAGACAGATGGGATTTGCTTGATAAA
CTTTTAAATGAGAATTAA

Upstream 100 bases:

>100_bases
GCAGATGGACAAATCATAAAAACTGGCGGCAGTGATCTTGCTTTAGAGCTTGAACGCAAAGGTTATGAATGGACTGATAA
CTTTGTAAAAGAGACGTAAA

Downstream 100 bases:

>100_bases
TGGAAACGATTCAAAATTTTCCTGAAATAACCAAGAAAGACTTTCCTCTTTTAAATAAGAATTTAACAAATAATGAGCAA
ATCATTTATTTAGACCATGC

Product: ABC transporter, membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 405

Protein sequence:

>405_residues
MEIIEKIKTNKLIDNPTEIQKICLHKLQSNPLPNPKSEIWRLSNKSKLSNFLDYSVNEKDQKSLISYPYSSQNIIRLTIG
ENSQISLIEKNYSIQQLSKDKLDKFIKQQISCFDQNEHWSDLLNLSLSCDKNILGLKINGSKIPPIEIFSHASSNSLKAK
TLVIFLEKNCDIELLQVNLGVENSALSQSTFFFLEENSSVTHGVVSYGENKSNLVNSLNVIQQKNSKYNLGSLHFKFNYA
RFEIHIKQSAGNAKTNIKGMQVTKNDEQISTHTKIYFNGPNGFLDQINKSLADDKSHAIFEGSIIVPKIAQKTDASQLSR
NLLLSNLAQIDTKPQLEIIADDVKCKHGATISQLNEEELFYMRARGITLKEASKLQLSSYFQEIISFIPVVKDRWDLLDK
LLNEN

Sequences:

>Translated_405_residues
MEIIEKIKTNKLIDNPTEIQKICLHKLQSNPLPNPKSEIWRLSNKSKLSNFLDYSVNEKDQKSLISYPYSSQNIIRLTIG
ENSQISLIEKNYSIQQLSKDKLDKFIKQQISCFDQNEHWSDLLNLSLSCDKNILGLKINGSKIPPIEIFSHASSNSLKAK
TLVIFLEKNCDIELLQVNLGVENSALSQSTFFFLEENSSVTHGVVSYGENKSNLVNSLNVIQQKNSKYNLGSLHFKFNYA
RFEIHIKQSAGNAKTNIKGMQVTKNDEQISTHTKIYFNGPNGFLDQINKSLADDKSHAIFEGSIIVPKIAQKTDASQLSR
NLLLSNLAQIDTKPQLEIIADDVKCKHGATISQLNEEELFYMRARGITLKEASKLQLSSYFQEIISFIPVVKDRWDLLDK
LLNEN
>Mature_405_residues
MEIIEKIKTNKLIDNPTEIQKICLHKLQSNPLPNPKSEIWRLSNKSKLSNFLDYSVNEKDQKSLISYPYSSQNIIRLTIG
ENSQISLIEKNYSIQQLSKDKLDKFIKQQISCFDQNEHWSDLLNLSLSCDKNILGLKINGSKIPPIEIFSHASSNSLKAK
TLVIFLEKNCDIELLQVNLGVENSALSQSTFFFLEENSSVTHGVVSYGENKSNLVNSLNVIQQKNSKYNLGSLHFKFNYA
RFEIHIKQSAGNAKTNIKGMQVTKNDEQISTHTKIYFNGPNGFLDQINKSLADDKSHAIFEGSIIVPKIAQKTDASQLSR
NLLLSNLAQIDTKPQLEIIADDVKCKHGATISQLNEEELFYMRARGITLKEASKLQLSSYFQEIISFIPVVKDRWDLLDK
LLNEN

Specific function: FhuF function [C]

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

Organism=Escherichia coli, GI1787971, Length=114, Percent_Identity=42.1052631578947, Blast_Score=105, Evalue=6e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000825
- InterPro:   IPR011542 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 45971; Mature: 45971

Theoretical pI: Translated: 8.43; Mature: 8.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIIEKIKTNKLIDNPTEIQKICLHKLQSNPLPNPKSEIWRLSNKSKLSNFLDYSVNEKD
CCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCCCHHHHHHHHCCCCCCHH
QKSLISYPYSSQNIIRLTIGENSQISLIEKNYSIQQLSKDKLDKFIKQQISCFDQNEHWS
HHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHHH
DLLNLSLSCDKNILGLKINGSKIPPIEIFSHASSNSLKAKTLVIFLEKNCDIELLQVNLG
HHHCEEEECCCCEEEEEECCCCCCHHHEECCCCCCCCEEEEEEEEEECCCCEEEEEEECC
VENSALSQSTFFFLEENSSVTHGVVSYGENKSNLVNSLNVIQQKNSKYNLGSLHFKFNYA
CCCCCCCCEEEEEEECCCCCCCHHHCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEEE
RFEIHIKQSAGNAKTNIKGMQVTKNDEQISTHTKIYFNGPNGFLDQINKSLADDKSHAIF
EEEEEEEECCCCCCCCCCEEEEECCCCCEEEEEEEEEECCCHHHHHHHHHHCCCCCCEEE
EGSIIVPKIAQKTDASQLSRNLLLSNLAQIDTKPQLEIIADDVKCKHGATISQLNEEELF
ECCEEECCHHCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHCCHHHEE
YMRARGITLKEASKLQLSSYFQEIISFIPVVKDRWDLLDKLLNEN
EEHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEIIEKIKTNKLIDNPTEIQKICLHKLQSNPLPNPKSEIWRLSNKSKLSNFLDYSVNEKD
CCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCCCHHHHHHHHCCCCCCHH
QKSLISYPYSSQNIIRLTIGENSQISLIEKNYSIQQLSKDKLDKFIKQQISCFDQNEHWS
HHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHHH
DLLNLSLSCDKNILGLKINGSKIPPIEIFSHASSNSLKAKTLVIFLEKNCDIELLQVNLG
HHHCEEEECCCCEEEEEECCCCCCHHHEECCCCCCCCEEEEEEEEEECCCCEEEEEEECC
VENSALSQSTFFFLEENSSVTHGVVSYGENKSNLVNSLNVIQQKNSKYNLGSLHFKFNYA
CCCCCCCCEEEEEEECCCCCCCHHHCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEEE
RFEIHIKQSAGNAKTNIKGMQVTKNDEQISTHTKIYFNGPNGFLDQINKSLADDKSHAIF
EEEEEEEECCCCCCCCCCEEEEECCCCCEEEEEEEEEECCCHHHHHHHHHHCCCCCCEEE
EGSIIVPKIAQKTDASQLSRNLLLSNLAQIDTKPQLEIIADDVKCKHGATISQLNEEELF
ECCEEECCHHCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHCCHHHEE
YMRARGITLKEASKLQLSSYFQEIISFIPVVKDRWDLLDKLLNEN
EEHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]