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The map label for this gene is ymdB [H]

Identifier: 78222397

GI number: 78222397

Start: 1307756

End: 1308550

Strand: Direct

Name: ymdB [H]

Synonym: Gmet_1181

Alternate gene names: 78222397

Gene position: 1307756-1308550 (Clockwise)

Preceding gene: 78222396

Following gene: 78222398

Centisome position: 32.72

GC content: 53.33

Gene sequence:

>795_bases
TTGAGTATGCCCGTTAATATCCTTTTTATTGGTGATATCGTTGGCGCCCCGGGCCGTCAGGCCGTGTCCCGCGAGCTCCA
CCGCCTCATTGACCGTTACCGGATAGATCTGGTCATAGCCAATGGCGAGAACGCGGCCGGCGGTTTCGGCATTACCGAAG
AGAAGGCCCGCGAACTCTATTCTCTCGGTATCGACGTGTTAACGAGTGGAAACCACGTCTGGGATAAAAAGGAATCGTAT
CCCTATATCCGACGGGAGGAGCGTCTTGTGCGGCCGGCTAACTACCCCCCTGAGACGATTGGTCGGGGGAGCACGGTCGT
GCGGACCGCCGGAGGAATTAGTATTGGTATCCTTAACCTCGAAGGTCGCGTATTCATGAACAGTCTTGATTGTCCATTCC
GTGCTGCTGACCGGGAGATAGTTCAGCTTAAGGAGCAAGCCAACATTATTTTTGTTGATTTTCATGCCGAAGCCACTTCC
GAAAAAGTTGCCTTGGGTTGGTATCTGGACGGCAAAGTGAGTGCCGTTGTCGGAACGCACACCCATGTTCAGACAGCCGA
CGAGCGGATCCTTCCCGGCGGCACCGCCTATATGACAGACGCTGGAATGACCGGTAGTTTCGATTCGGTAATCGGCGTCA
AAAAAGAGCTTGCCGTTGAGCGCTTCACAAGCCAGATGCCGGTCCGGTTCGAAGTAGCAAAAAAAGATATACGTCTGAAC
GGAGTTGTCCTTGGGATCGATGAGATGAGCGGTTCCGCGCTTTCAGTTGAACGGATTTCACTTACGTGTTCGTGA

Upstream 100 bases:

>100_bases
CGGGCTGTTGTTCTCGCTAAAGACATAGCAAAGAAGATCGAAGCCGAGATGACCTACCCGGGGCAGATCAAGGTTAACGT
GATCCGGGAAACCCGGGCCA

Downstream 100 bases:

>100_bases
GGAGGGAGAGAGTTCCATGTCGGTAGCTGAACAGATGGCGATCATCAAGCGCGGAGCAACAGAAATACTCCTTGAGAAAG
AACTTGAGGAAAAAATCGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 263

Protein sequence:

>264_residues
MSMPVNILFIGDIVGAPGRQAVSRELHRLIDRYRIDLVIANGENAAGGFGITEEKARELYSLGIDVLTSGNHVWDKKESY
PYIRREERLVRPANYPPETIGRGSTVVRTAGGISIGILNLEGRVFMNSLDCPFRAADREIVQLKEQANIIFVDFHAEATS
EKVALGWYLDGKVSAVVGTHTHVQTADERILPGGTAYMTDAGMTGSFDSVIGVKKELAVERFTSQMPVRFEVAKKDIRLN
GVVLGIDEMSGSALSVERISLTCS

Sequences:

>Translated_264_residues
MSMPVNILFIGDIVGAPGRQAVSRELHRLIDRYRIDLVIANGENAAGGFGITEEKARELYSLGIDVLTSGNHVWDKKESY
PYIRREERLVRPANYPPETIGRGSTVVRTAGGISIGILNLEGRVFMNSLDCPFRAADREIVQLKEQANIIFVDFHAEATS
EKVALGWYLDGKVSAVVGTHTHVQTADERILPGGTAYMTDAGMTGSFDSVIGVKKELAVERFTSQMPVRFEVAKKDIRLN
GVVLGIDEMSGSALSVERISLTCS
>Mature_263_residues
SMPVNILFIGDIVGAPGRQAVSRELHRLIDRYRIDLVIANGENAAGGFGITEEKARELYSLGIDVLTSGNHVWDKKESYP
YIRREERLVRPANYPPETIGRGSTVVRTAGGISIGILNLEGRVFMNSLDCPFRAADREIVQLKEQANIIFVDFHAEATSE
KVALGWYLDGKVSAVVGTHTHVQTADERILPGGTAYMTDAGMTGSFDSVIGVKKELAVERFTSQMPVRFEVAKKDIRLNG
VVLGIDEMSGSALSVERISLTCS

Specific function: Unknown

COG id: COG1692

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005235 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28885; Mature: 28754

Theoretical pI: Translated: 6.05; Mature: 6.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMPVNILFIGDIVGAPGRQAVSRELHRLIDRYRIDLVIANGENAAGGFGITEEKARELY
CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHEEEEEEEECCCCCCCCCCCCHHHHHHHH
SLGIDVLTSGNHVWDKKESYPYIRREERLVRPANYPPETIGRGSTVVRTAGGISIGILNL
HCCEEEEECCCEECCCCCCCCCCCCHHHCCCCCCCCHHHCCCCCEEEEECCCEEEEEEEE
EGRVFMNSLDCPFRAADREIVQLKEQANIIFVDFHAEATSEKVALGWYLDGKVSAVVGTH
CCEEEEECCCCCCCCCCHHHHHHHHCCCEEEEEEECCCCCCEEEEEEEECCEEEEEEECC
THVQTADERILPGGTAYMTDAGMTGSFDSVIGVKKELAVERFTSQMPVRFEVAKKDIRLN
CEEECCCCEECCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEE
GVVLGIDEMSGSALSVERISLTCS
EEEEEEECCCCCEEEEEEEEEEEC
>Mature Secondary Structure 
SMPVNILFIGDIVGAPGRQAVSRELHRLIDRYRIDLVIANGENAAGGFGITEEKARELY
CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHEEEEEEEECCCCCCCCCCCCHHHHHHHH
SLGIDVLTSGNHVWDKKESYPYIRREERLVRPANYPPETIGRGSTVVRTAGGISIGILNL
HCCEEEEECCCEECCCCCCCCCCCCHHHCCCCCCCCHHHCCCCCEEEEECCCEEEEEEEE
EGRVFMNSLDCPFRAADREIVQLKEQANIIFVDFHAEATSEKVALGWYLDGKVSAVVGTH
CCEEEEECCCCCCCCCCHHHHHHHHCCCEEEEEEECCCCCCEEEEEEEECCEEEEEEECC
THVQTADERILPGGTAYMTDAGMTGSFDSVIGVKKELAVERFTSQMPVRFEVAKKDIRLN
CEEECCCCEECCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEE
GVVLGIDEMSGSALSVERISLTCS
EEEEEEECCCCCEEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]