Definition | Chlorobium chlorochromatii CaD3 chromosome, complete genome. |
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Accession | NC_007514 |
Length | 2,572,079 |
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The map label for this gene is 78188352
Identifier: 78188352
GI number: 78188352
Start: 429803
End: 430282
Strand: Reverse
Name: 78188352
Synonym: Cag_0374
Alternate gene names: NA
Gene position: 430282-429803 (Counterclockwise)
Preceding gene: 78188354
Following gene: 78188351
Centisome position: 16.73
GC content: 46.46
Gene sequence:
>480_bases ATGAGTAACCCCAACCCCTCTCCCCTATCCCATGCCATGCCAGAGGCTATTCGTCAATTACCAGCCGAAGCGCAGCAAGA GGTGTTGGCTTGGGTAGAAAAGCTTCTTGCCACACAAAACGAAGGTGTTGATGAATTGTACAATGCAATTAGCTCCATTG TAAAATTTATCCCTAACTTTATGGTCATTCCACTCATGGTGGAACAAATTCACCCCCGCATTGCGGCTGGTGTGTGTGTA AAAATGGGGGTTGAAAAAGCTACAGGTTACGCTAACGATTTACCCGTTGAGTACCTCAGCAGCGTAACACACCACCTCCC AAACCCGATGGTTGGCGAAATTTTAACTGCCATGAAACGCTATGCAGCCGAAAAACTTATTACTTACGAAATAGAGCACC ATCGTACCGACCTTCAAGCGCTTATGCCCTCTGTAAGTGAATCGCACCAAGCGCTCATTACAAAGCATCTCTCAACATAG
Upstream 100 bases:
>100_bases AAAGAAGCGCTCGGTTTCCAATTCTGATTTTTTTTATCCATCTTGAAAGCAGCGTAATTGATAATAGTTCTTATTGACCT CTTAACTGTAATGATTGCCC
Downstream 100 bases:
>100_bases TCGGAAGTTATGAACGACCTGCTTGAAAAGCCTCGCAAAATTTACGTATCGCGCAGCATTGAGTTTAACGCTGCCCATCG GCTTTGCAACCCCACCTTAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 159; Mature: 158
Protein sequence:
>159_residues MSNPNPSPLSHAMPEAIRQLPAEAQQEVLAWVEKLLATQNEGVDELYNAISSIVKFIPNFMVIPLMVEQIHPRIAAGVCV KMGVEKATGYANDLPVEYLSSVTHHLPNPMVGEILTAMKRYAAEKLITYEIEHHRTDLQALMPSVSESHQALITKHLST
Sequences:
>Translated_159_residues MSNPNPSPLSHAMPEAIRQLPAEAQQEVLAWVEKLLATQNEGVDELYNAISSIVKFIPNFMVIPLMVEQIHPRIAAGVCV KMGVEKATGYANDLPVEYLSSVTHHLPNPMVGEILTAMKRYAAEKLITYEIEHHRTDLQALMPSVSESHQALITKHLST >Mature_158_residues SNPNPSPLSHAMPEAIRQLPAEAQQEVLAWVEKLLATQNEGVDELYNAISSIVKFIPNFMVIPLMVEQIHPRIAAGVCVK MGVEKATGYANDLPVEYLSSVTHHLPNPMVGEILTAMKRYAAEKLITYEIEHHRTDLQALMPSVSESHQALITKHLST
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17634; Mature: 17502
Theoretical pI: Translated: 6.07; Mature: 6.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 5.0 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 4.4 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNPNPSPLSHAMPEAIRQLPAEAQQEVLAWVEKLLATQNEGVDELYNAISSIVKFIPNF CCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH MVIPLMVEQIHPRIAAGVCVKMGVEKATGYANDLPVEYLSSVTHHLPNPMVGEILTAMKR HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH YAAEKLITYEIEHHRTDLQALMPSVSESHQALITKHLST HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SNPNPSPLSHAMPEAIRQLPAEAQQEVLAWVEKLLATQNEGVDELYNAISSIVKFIPNF CCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH MVIPLMVEQIHPRIAAGVCVKMGVEKATGYANDLPVEYLSSVTHHLPNPMVGEILTAMKR HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH YAAEKLITYEIEHHRTDLQALMPSVSESHQALITKHLST HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA