| Definition | Burkholderia sp. 383 chromosome 1, complete genome. |
|---|---|
| Accession | NC_007510 |
| Length | 3,694,126 |
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The map label for this gene is fadB [H]
Identifier: 78066676
GI number: 78066676
Start: 2253668
End: 2255752
Strand: Reverse
Name: fadB [H]
Synonym: Bcep18194_A5207
Alternate gene names: 78066676
Gene position: 2255752-2253668 (Counterclockwise)
Preceding gene: 78066677
Following gene: 78066675
Centisome position: 61.06
GC content: 68.11
Gene sequence:
>2085_bases ATGGCAGTGGATTACTCGACTCGCGACGGCGTGGCCGTCCTTACACTCAACAATCCGCCCGTCAACGGGCTCGGCCTGTC GACCCGTCAGGGCGTCATGGACGCGCTCGATCGCGCCGTGCAGGACCCGTCGGTCACGGCCATCGTGCTGACCGGCGCGG GACGCGCATTCTCGGGCGGCGCCGACATCACCGAATTCAATACGCCGAAGGCGTTGCAGGAGCCGACGCTGCACACCGTG ATTCACGCGGTGGAGGCAAGCGCGAAGCCCGTCGTCGCGGCGCTGCACAGCGTCGTGATGGGCGGCGGCCTCGAGCTCGC GCTCGGCGCGCACTACCGCGTCGCGGCACCGGGCGCGCAGGTCGCGCTGCCCGAAGTGAAGCTCGGCCTGCTGCCGGGCG CGGGCGGCACGCAGCGCCTGCCGCGTGCGGTGGGGCTCGAAACCGCGCTGAACATGATCGTGTCGGGCGCGCCGGTGCCG TCGGAGCAGCTCGCGAAGAGCGGGCTGTTCGACGAAATGGCCGACGGCGACCTGCTCGACGCGGCCGTCGCGTTCGCCCG CAAGGTCGGTGCGCAGAAGGGGCCGCATCCGCGCGTGCGCGATCGCAAGATCGTCCACGCGAACGCCGCGGGCTTCATCC AGTTCGCGCGCAATTCGGCCCGGGCCGCCGCACCGAATTTCCCTGCACCGCACAAGTGCATCGACGCGATCGAGGCCGGC GTGCTGCACGGCTTCGACAAGGGCAGCGTTGCCGAGCGCGAGGGTTTCGTCGCGTTGATGATGACGCCGGAAAGCCGCGC GCTGCGGCATGCGTTCTTCGGCGAGCGCGCCGCGAGCAAGATTCCCGACGTGCCGGCCGATACGCCGCTGCGCGAGATTC GCCGCGTCGGCGTGATCGGCGCGGGCACGATGGGCGGCGGGATCGCGATGAACTTCGTCAACGCGGGCCTGCCCGTCACG CTGCTCGAGACGAAACAGGACGCGCTCGAGCGCGGCGTCGCGACGATCCGCAAGAACTACGACGCGCAGGTGAAGAAGGG CAAGCTCACGCAGGAGAAGCTCGATGCGCGCATGGCGCTGATCACGCCGACGCTGTCCTACGACGACCTGAAGGACGCCG ACCTGATCGTCGAGGCCGTGTTCGAGGAACTCGGCGTGAAGGAGCAGGTGTTCAAGAAGCTCGACGAAGTCGCGAAGGCG GGTGCGATCCTCGCGTCGAACACGTCGACGCTCGATGTCGACAAGATCGCGGCGTTCACGAAGCGCCCGCAGGACGTCGT CGGCATGCACTTCTTCAGCCCGGCGAACGTGATGAAGCTGCTCGAGGTCGTGCGCGGCGCGCAGACCGCGAAGGACGTGC TCGCCACCGTGATGGCCGTCGCGAAGAAGATCCGCAAGACGGCGGTCGTGTCGGGCGTGTGCGACGGCTTCATCGGCAAC CGGATGATCGAGCAGTACATCCGCCAGGCGCTCTTCATGCTCGAGGAAGGCGCGCTGCCCGCGCAGGTCGACCGTGCGAT CGAGAAATTCGGTTTCGCGATGGGCCCGTTCCGGATGAGTGACCTCGCCGGCAACGACATCGGCTGGGCGATCCGCAAGC GCCGCTACATCGAGCAGCCCGATCTCCAGTACTCGAAGATTGCCGACCACCTGTGCGAGCAGGGCCGCTTCGGCCAGAAG ACGGGCGCCGGCTGGTACGACTACGTGCCGGGCGATCGCAAGGCGAAGCCGTCGTCGCTCGTCGACGAGATGGTCGTCGC GTATTCGAAGGAACGCGGCGTCGAGCGACGCAAGATCGGCGACGACGAGATCGTCGAGCGGCTCGTGTTCGCGCTGGCCA ACGAAGGCGCGAAGATCCTCGAAGAGAAGATCGCGTCGAAGGCGTCCGACATCGACATGGTCTACCTGACCGGCTATGGC TTCCCGTTGTGGCGCGGCGGCCCGATGCTGTACGCGGACGCGGTCGGCCTCTACAACGTCGAGCGCGCGATTCGCCGCTA CGCGGCGGCACCGAACGGCGACGCATGGCAGCTCGCGCCGTCGATCGCGGAGCTCGCGAAGGCGGGCCGCGGGTTCAACG GCTGA
Upstream 100 bases:
>100_bases TTTTCGTTGTATGCTGCCTCCGTTCATCCGGACATGCGGCTGTTCGACCGCGCACAATGAAGCGCAGCCACCCCGGCGCG CGATGCATGGAGGCAGGCAG
Downstream 100 bases:
>100_bases CGCGCCGGATCGCGGCGCGACGCACACCCGGAGAAATGCAATGAAACGCACCGACGACGTACTGCTCGTGATCGACGTGC AATACGACTTCATGCCGGGC
Product: 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase
Products: NA
Alternate protein names: Enoyl-CoA hydratase/Delta(3)-cis-Delta(2)-trans-enoyl-CoA isomerase/3-hydroxybutyryl-CoA epimerase; 3-hydroxyacyl-CoA dehydrogenase [H]
Number of amino acids: Translated: 694; Mature: 693
Protein sequence:
>694_residues MAVDYSTRDGVAVLTLNNPPVNGLGLSTRQGVMDALDRAVQDPSVTAIVLTGAGRAFSGGADITEFNTPKALQEPTLHTV IHAVEASAKPVVAALHSVVMGGGLELALGAHYRVAAPGAQVALPEVKLGLLPGAGGTQRLPRAVGLETALNMIVSGAPVP SEQLAKSGLFDEMADGDLLDAAVAFARKVGAQKGPHPRVRDRKIVHANAAGFIQFARNSARAAAPNFPAPHKCIDAIEAG VLHGFDKGSVAEREGFVALMMTPESRALRHAFFGERAASKIPDVPADTPLREIRRVGVIGAGTMGGGIAMNFVNAGLPVT LLETKQDALERGVATIRKNYDAQVKKGKLTQEKLDARMALITPTLSYDDLKDADLIVEAVFEELGVKEQVFKKLDEVAKA GAILASNTSTLDVDKIAAFTKRPQDVVGMHFFSPANVMKLLEVVRGAQTAKDVLATVMAVAKKIRKTAVVSGVCDGFIGN RMIEQYIRQALFMLEEGALPAQVDRAIEKFGFAMGPFRMSDLAGNDIGWAIRKRRYIEQPDLQYSKIADHLCEQGRFGQK TGAGWYDYVPGDRKAKPSSLVDEMVVAYSKERGVERRKIGDDEIVERLVFALANEGAKILEEKIASKASDIDMVYLTGYG FPLWRGGPMLYADAVGLYNVERAIRRYAAAPNGDAWQLAPSIAELAKAGRGFNG
Sequences:
>Translated_694_residues MAVDYSTRDGVAVLTLNNPPVNGLGLSTRQGVMDALDRAVQDPSVTAIVLTGAGRAFSGGADITEFNTPKALQEPTLHTV IHAVEASAKPVVAALHSVVMGGGLELALGAHYRVAAPGAQVALPEVKLGLLPGAGGTQRLPRAVGLETALNMIVSGAPVP SEQLAKSGLFDEMADGDLLDAAVAFARKVGAQKGPHPRVRDRKIVHANAAGFIQFARNSARAAAPNFPAPHKCIDAIEAG VLHGFDKGSVAEREGFVALMMTPESRALRHAFFGERAASKIPDVPADTPLREIRRVGVIGAGTMGGGIAMNFVNAGLPVT LLETKQDALERGVATIRKNYDAQVKKGKLTQEKLDARMALITPTLSYDDLKDADLIVEAVFEELGVKEQVFKKLDEVAKA GAILASNTSTLDVDKIAAFTKRPQDVVGMHFFSPANVMKLLEVVRGAQTAKDVLATVMAVAKKIRKTAVVSGVCDGFIGN RMIEQYIRQALFMLEEGALPAQVDRAIEKFGFAMGPFRMSDLAGNDIGWAIRKRRYIEQPDLQYSKIADHLCEQGRFGQK TGAGWYDYVPGDRKAKPSSLVDEMVVAYSKERGVERRKIGDDEIVERLVFALANEGAKILEEKIASKASDIDMVYLTGYG FPLWRGGPMLYADAVGLYNVERAIRRYAAAPNGDAWQLAPSIAELAKAGRGFNG >Mature_693_residues AVDYSTRDGVAVLTLNNPPVNGLGLSTRQGVMDALDRAVQDPSVTAIVLTGAGRAFSGGADITEFNTPKALQEPTLHTVI HAVEASAKPVVAALHSVVMGGGLELALGAHYRVAAPGAQVALPEVKLGLLPGAGGTQRLPRAVGLETALNMIVSGAPVPS EQLAKSGLFDEMADGDLLDAAVAFARKVGAQKGPHPRVRDRKIVHANAAGFIQFARNSARAAAPNFPAPHKCIDAIEAGV LHGFDKGSVAEREGFVALMMTPESRALRHAFFGERAASKIPDVPADTPLREIRRVGVIGAGTMGGGIAMNFVNAGLPVTL LETKQDALERGVATIRKNYDAQVKKGKLTQEKLDARMALITPTLSYDDLKDADLIVEAVFEELGVKEQVFKKLDEVAKAG AILASNTSTLDVDKIAAFTKRPQDVVGMHFFSPANVMKLLEVVRGAQTAKDVLATVMAVAKKIRKTAVVSGVCDGFIGNR MIEQYIRQALFMLEEGALPAQVDRAIEKFGFAMGPFRMSDLAGNDIGWAIRKRRYIEQPDLQYSKIADHLCEQGRFGQKT GAGWYDYVPGDRKAKPSSLVDEMVVAYSKERGVERRKIGDDEIVERLVFALANEGAKILEEKIASKASDIDMVYLTGYGF PLWRGGPMLYADAVGLYNVERAIRRYAAAPNGDAWQLAPSIAELAKAGRGFNG
Specific function: Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities [H]
COG id: COG1250
COG function: function code I; 3-hydroxyacyl-CoA dehydrogenase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the 3- hydroxyacyl-CoA dehydrogenase family [H]
Homologues:
Organism=Homo sapiens, GI68989263, Length=710, Percent_Identity=41.4084507042254, Blast_Score=515, Evalue=1e-146, Organism=Homo sapiens, GI261878539, Length=613, Percent_Identity=42.2512234910277, Blast_Score=457, Evalue=1e-128, Organism=Homo sapiens, GI20127408, Length=706, Percent_Identity=31.3031161473088, Blast_Score=328, Evalue=1e-89, Organism=Homo sapiens, GI296179429, Length=290, Percent_Identity=33.7931034482759, Blast_Score=144, Evalue=3e-34, Organism=Homo sapiens, GI296179427, Length=307, Percent_Identity=31.9218241042345, Blast_Score=136, Evalue=7e-32, Organism=Homo sapiens, GI194097323, Length=193, Percent_Identity=35.2331606217617, Blast_Score=104, Evalue=3e-22, Organism=Homo sapiens, GI37594469, Length=176, Percent_Identity=31.25, Blast_Score=82, Evalue=2e-15, Organism=Homo sapiens, GI37594471, Length=176, Percent_Identity=31.25, Blast_Score=82, Evalue=2e-15, Organism=Homo sapiens, GI115430219, Length=237, Percent_Identity=27.0042194092827, Blast_Score=75, Evalue=1e-13, Organism=Escherichia coli, GI1788682, Length=704, Percent_Identity=33.6647727272727, Blast_Score=315, Evalue=5e-87, Organism=Escherichia coli, GI1790281, Length=673, Percent_Identity=32.2436849925706, Blast_Score=300, Evalue=3e-82, Organism=Escherichia coli, GI1787661, Length=351, Percent_Identity=34.1880341880342, Blast_Score=171, Evalue=2e-43, Organism=Escherichia coli, GI1787659, Length=189, Percent_Identity=35.978835978836, Blast_Score=105, Evalue=1e-23, Organism=Escherichia coli, GI221142681, Length=191, Percent_Identity=30.8900523560209, Blast_Score=83, Evalue=6e-17, Organism=Escherichia coli, GI1787660, Length=193, Percent_Identity=31.0880829015544, Blast_Score=71, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17558304, Length=730, Percent_Identity=31.7808219178082, Blast_Score=299, Evalue=3e-81, Organism=Caenorhabditis elegans, GI17508953, Length=699, Percent_Identity=32.3319027181688, Blast_Score=296, Evalue=3e-80, Organism=Caenorhabditis elegans, GI17508951, Length=699, Percent_Identity=32.3319027181688, Blast_Score=296, Evalue=3e-80, Organism=Caenorhabditis elegans, GI25144276, Length=589, Percent_Identity=33.616298811545, Blast_Score=259, Evalue=4e-69, Organism=Caenorhabditis elegans, GI71985923, Length=392, Percent_Identity=31.8877551020408, Blast_Score=238, Evalue=6e-63, Organism=Caenorhabditis elegans, GI71985930, Length=393, Percent_Identity=28.498727735369, Blast_Score=221, Evalue=1e-57, Organism=Caenorhabditis elegans, GI17549919, Length=296, Percent_Identity=34.4594594594595, Blast_Score=150, Evalue=3e-36, Organism=Caenorhabditis elegans, GI17553560, Length=296, Percent_Identity=33.1081081081081, Blast_Score=149, Evalue=4e-36, Organism=Caenorhabditis elegans, GI17563036, Length=292, Percent_Identity=31.1643835616438, Blast_Score=127, Evalue=3e-29, Organism=Caenorhabditis elegans, GI17554946, Length=189, Percent_Identity=34.3915343915344, Blast_Score=97, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17540714, Length=188, Percent_Identity=33.5106382978723, Blast_Score=97, Evalue=3e-20, Organism=Caenorhabditis elegans, GI25145438, Length=168, Percent_Identity=33.9285714285714, Blast_Score=88, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17560910, Length=186, Percent_Identity=29.5698924731183, Blast_Score=78, Evalue=1e-14, Organism=Saccharomyces cerevisiae, GI6320241, Length=195, Percent_Identity=25.1282051282051, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI24583077, Length=720, Percent_Identity=32.9166666666667, Blast_Score=321, Evalue=1e-87, Organism=Drosophila melanogaster, GI24583079, Length=720, Percent_Identity=32.9166666666667, Blast_Score=321, Evalue=1e-87, Organism=Drosophila melanogaster, GI19921000, Length=720, Percent_Identity=32.9166666666667, Blast_Score=320, Evalue=2e-87, Organism=Drosophila melanogaster, GI20129971, Length=186, Percent_Identity=36.5591397849462, Blast_Score=108, Evalue=9e-24, Organism=Drosophila melanogaster, GI24653477, Length=186, Percent_Identity=36.5591397849462, Blast_Score=108, Evalue=9e-24, Organism=Drosophila melanogaster, GI24583165, Length=194, Percent_Identity=30.9278350515464, Blast_Score=80, Evalue=7e-15, Organism=Drosophila melanogaster, GI24653139, Length=154, Percent_Identity=34.4155844155844, Blast_Score=77, Evalue=6e-14, Organism=Drosophila melanogaster, GI45549573, Length=254, Percent_Identity=26.7716535433071, Blast_Score=69, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006180 - InterPro: IPR006176 - InterPro: IPR006108 - InterPro: IPR008927 - InterPro: IPR001753 - InterPro: IPR013328 - InterPro: IPR012799 - InterPro: IPR016040 [H]
Pfam domain/function: PF00725 3HCDH; PF02737 3HCDH_N; PF00378 ECH [H]
EC number: =4.2.1.17; =5.1.2.3; =5.3.3.8; =1.1.1.35 [H]
Molecular weight: Translated: 74261; Mature: 74130
Theoretical pI: Translated: 8.65; Mature: 8.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVDYSTRDGVAVLTLNNPPVNGLGLSTRQGVMDALDRAVQDPSVTAIVLTGAGRAFSGG CCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC ADITEFNTPKALQEPTLHTVIHAVEASAKPVVAALHSVVMGGGLELALGAHYRVAAPGAQ CCCCCCCCCHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCEEEECCCCC VALPEVKLGLLPGAGGTQRLPRAVGLETALNMIVSGAPVPSEQLAKSGLFDEMADGDLLD EECCCEEEEECCCCCCHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHCCCHHHH AAVAFARKVGAQKGPHPRVRDRKIVHANAAGFIQFARNSARAAAPNFPAPHKCIDAIEAG HHHHHHHHHCCCCCCCCCCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH VLHGFDKGSVAEREGFVALMMTPESRALRHAFFGERAASKIPDVPADTPLREIRRVGVIG HHCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCEE AGTMGGGIAMNFVNAGLPVTLLETKQDALERGVATIRKNYDAQVKKGKLTQEKLDARMAL CCCCCCHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHHHHCCHHE ITPTLSYDDLKDADLIVEAVFEELGVKEQVFKKLDEVAKAGAILASNTSTLDVDKIAAFT EECCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCEEEECCCCCCCHHHHHHHH KRPQDVVGMHFFSPANVMKLLEVVRGAQTAKDVLATVMAVAKKIRKTAVVSGVCDGFIGN CCCHHHHCCHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RMIEQYIRQALFMLEEGALPAQVDRAIEKFGFAMGPFRMSDLAGNDIGWAIRKRRYIEQP HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHCCCCCHHHHHHHHHCCCCC DLQYSKIADHLCEQGRFGQKTGAGWYDYVPGDRKAKPSSLVDEMVVAYSKERGVERRKIG CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHCCC DDEIVERLVFALANEGAKILEEKIASKASDIDMVYLTGYGFPLWRGGPMLYADAVGLYNV CHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCEEEECCHHHHHH ERAIRRYAAAPNGDAWQLAPSIAELAKAGRGFNG HHHHHHHHCCCCCCCEEHHHHHHHHHHHCCCCCC >Mature Secondary Structure AVDYSTRDGVAVLTLNNPPVNGLGLSTRQGVMDALDRAVQDPSVTAIVLTGAGRAFSGG CCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC ADITEFNTPKALQEPTLHTVIHAVEASAKPVVAALHSVVMGGGLELALGAHYRVAAPGAQ CCCCCCCCCHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCEEEECCCCC VALPEVKLGLLPGAGGTQRLPRAVGLETALNMIVSGAPVPSEQLAKSGLFDEMADGDLLD EECCCEEEEECCCCCCHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHCCCHHHH AAVAFARKVGAQKGPHPRVRDRKIVHANAAGFIQFARNSARAAAPNFPAPHKCIDAIEAG HHHHHHHHHCCCCCCCCCCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH VLHGFDKGSVAEREGFVALMMTPESRALRHAFFGERAASKIPDVPADTPLREIRRVGVIG HHCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCEE AGTMGGGIAMNFVNAGLPVTLLETKQDALERGVATIRKNYDAQVKKGKLTQEKLDARMAL CCCCCCHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHHHHCCHHE ITPTLSYDDLKDADLIVEAVFEELGVKEQVFKKLDEVAKAGAILASNTSTLDVDKIAAFT EECCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCEEEECCCCCCCHHHHHHHH KRPQDVVGMHFFSPANVMKLLEVVRGAQTAKDVLATVMAVAKKIRKTAVVSGVCDGFIGN CCCHHHHCCHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RMIEQYIRQALFMLEEGALPAQVDRAIEKFGFAMGPFRMSDLAGNDIGWAIRKRRYIEQP HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHCCCCCHHHHHHHHHCCCCC DLQYSKIADHLCEQGRFGQKTGAGWYDYVPGDRKAKPSSLVDEMVVAYSKERGVERRKIG CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHCCC DDEIVERLVFALANEGAKILEEKIASKASDIDMVYLTGYGFPLWRGGPMLYADAVGLYNV CHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCEEEECCHHHHHH ERAIRRYAAAPNGDAWQLAPSIAELAKAGRGFNG HHHHHHHHCCCCCCCEEHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA