Click here to switch to the map view.

The map label for this gene is ycfH [C]

Identifier: 78066660

GI number: 78066660

Start: 2236682

End: 2237461

Strand: Reverse

Name: ycfH [C]

Synonym: Bcep18194_A5191

Alternate gene names: 78066660

Gene position: 2237461-2236682 (Counterclockwise)

Preceding gene: 78066661

Following gene: 78066659

Centisome position: 60.57

GC content: 64.74

Gene sequence:

>780_bases
ATGTTCGTCGACTCTCACTGCCATATCAATTTCAAGGGCCTGGCCGACCGCCTGCCGGCCGTTCTCGAGAACATGCGCGA
GCACGACGTCACGCACGCGCTGTGCGTGTCGGTCGATTTCGAGACGCTGCCGGAGGTTCTTGCGATCGCGGACGCGCATG
ACAACGTCTATGCGTCGGTCGGCGTGCATCCCGATCACGAGGACATGCACGAGCCGACGCTCGCGGAGCTCGTCGAGCTG
GCCGCGCACCCGAAGGTCGTCGCGATCGGCGAAACGGGCCTCGACTACTACCGTCTCGAAGGCCGCTCGATCGACGACAT
GGAATGGCAGCGCGAACGCTTTCGCACGCATATCCGCGCGGCGACCGCGACGATGAAGCCGCTGATCATCCACACGCGCT
CGTCGTCGGAAGACACGCTGCGGATCATGGCCGAGGAGCGTGCGGACGTACCGGGCGGCGTGATGCACTGCTTCACCGAG
CCGTGGTCGGTGGCCGAGCAGGCGCTAGCGCAGAACTTCCATATCTCGCTGTCGGGCATCGTCACGTTCAAGAGTGCGAC
CGACGTGCAGGACGTCGCGCGGCGCGTGCCGCTCGACCGGCTGCTGATCGAGACCGACTCGCCGTACCTCGCGCCGGTGC
CGTATCGCGGCAAGCCGAATGAACCTGCGTACGTCAGCCATGTCGGACGCTTTATCGCATCCGAGCGCGGGATTGCCGTC
GAGGCGCTCGCCGATGCGACGACACAGAACTTTTTCCGGCTGTTCAAGATCGCCCGCTAA

Upstream 100 bases:

>100_bases
CACGCCGCGACGCGACCGTGGCCGTCCGGCCCGCGAACGCCGCCCGTTGCCGCATGCCGGCGCGCGCATGAGCACCCGCC
TTACGTATTCAGGAAACACG

Downstream 100 bases:

>100_bases
CGACGTGCGCGCAGCCGACAACCCAGGGAAGGAGCCCACAACAATGACGAAGCCGACCAATCATCTGCCGAAACGTGCAC
TCGTTGCTGCCGCGCTCGTC

Product: TatD-related deoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MFVDSHCHINFKGLADRLPAVLENMREHDVTHALCVSVDFETLPEVLAIADAHDNVYASVGVHPDHEDMHEPTLAELVEL
AAHPKVVAIGETGLDYYRLEGRSIDDMEWQRERFRTHIRAATATMKPLIIHTRSSSEDTLRIMAEERADVPGGVMHCFTE
PWSVAEQALAQNFHISLSGIVTFKSATDVQDVARRVPLDRLLIETDSPYLAPVPYRGKPNEPAYVSHVGRFIASERGIAV
EALADATTQNFFRLFKIAR

Sequences:

>Translated_259_residues
MFVDSHCHINFKGLADRLPAVLENMREHDVTHALCVSVDFETLPEVLAIADAHDNVYASVGVHPDHEDMHEPTLAELVEL
AAHPKVVAIGETGLDYYRLEGRSIDDMEWQRERFRTHIRAATATMKPLIIHTRSSSEDTLRIMAEERADVPGGVMHCFTE
PWSVAEQALAQNFHISLSGIVTFKSATDVQDVARRVPLDRLLIETDSPYLAPVPYRGKPNEPAYVSHVGRFIASERGIAV
EALADATTQNFFRLFKIAR
>Mature_259_residues
MFVDSHCHINFKGLADRLPAVLENMREHDVTHALCVSVDFETLPEVLAIADAHDNVYASVGVHPDHEDMHEPTLAELVEL
AAHPKVVAIGETGLDYYRLEGRSIDDMEWQRERFRTHIRAATATMKPLIIHTRSSSEDTLRIMAEERADVPGGVMHCFTE
PWSVAEQALAQNFHISLSGIVTFKSATDVQDVARRVPLDRLLIETDSPYLAPVPYRGKPNEPAYVSHVGRFIASERGIAV
EALADATTQNFFRLFKIAR

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI225903424, Length=252, Percent_Identity=28.968253968254, Blast_Score=99, Evalue=4e-21,
Organism=Homo sapiens, GI110349730, Length=268, Percent_Identity=27.9850746268657, Blast_Score=91, Evalue=8e-19,
Organism=Homo sapiens, GI110349734, Length=268, Percent_Identity=27.9850746268657, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI226061853, Length=273, Percent_Identity=27.4725274725275, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI14042943, Length=203, Percent_Identity=28.5714285714286, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI226061614, Length=263, Percent_Identity=25.8555133079848, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI225903439, Length=174, Percent_Identity=30.4597701149425, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI226061595, Length=226, Percent_Identity=25.6637168141593, Blast_Score=66, Evalue=4e-11,
Organism=Escherichia coli, GI1787342, Length=264, Percent_Identity=46.5909090909091, Blast_Score=207, Evalue=4e-55,
Organism=Escherichia coli, GI87082439, Length=262, Percent_Identity=28.2442748091603, Blast_Score=117, Evalue=9e-28,
Organism=Escherichia coli, GI48994985, Length=235, Percent_Identity=31.4893617021277, Blast_Score=114, Evalue=5e-27,
Organism=Caenorhabditis elegans, GI17559024, Length=229, Percent_Identity=30.5676855895196, Blast_Score=107, Evalue=7e-24,
Organism=Caenorhabditis elegans, GI17565396, Length=305, Percent_Identity=28.5245901639344, Blast_Score=94, Evalue=7e-20,
Organism=Caenorhabditis elegans, GI17543026, Length=200, Percent_Identity=32, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI71980746, Length=262, Percent_Identity=24.0458015267176, Blast_Score=77, Evalue=6e-15,
Organism=Drosophila melanogaster, GI24648690, Length=289, Percent_Identity=26.643598615917, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24586117, Length=209, Percent_Identity=29.1866028708134, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI221330018, Length=209, Percent_Identity=29.1866028708134, Blast_Score=82, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.- [C]

Molecular weight: Translated: 29006; Mature: 29006

Theoretical pI: Translated: 5.50; Mature: 5.50

Prosite motif: PS01137 TATD_1 ; PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFVDSHCHINFKGLADRLPAVLENMREHDVTHALCVSVDFETLPEVLAIADAHDNVYASV
CEECCEEEEEHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCCCEEEEE
GVHPDHEDMHEPTLAELVELAAHPKVVAIGETGLDYYRLEGRSIDDMEWQRERFRTHIRA
CCCCCHHHCCCCHHHHHHHHHCCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHHHH
ATATMKPLIIHTRSSSEDTLRIMAEERADVPGGVMHCFTEPWSVAEQALAQNFHISLSGI
HHHHCCEEEEEECCCCCHHHHHEEHHCCCCCCHHHHHHCCCHHHHHHHHHHCCEEEEEEE
VTFKSATDVQDVARRVPLDRLLIETDSPYLAPVPYRGKPNEPAYVSHVGRFIASERGIAV
EEECCCCCHHHHHHHCCHHHEEEECCCCEECCCCCCCCCCCCHHHHHHHHHHHCCCCCEE
EALADATTQNFFRLFKIAR
HHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MFVDSHCHINFKGLADRLPAVLENMREHDVTHALCVSVDFETLPEVLAIADAHDNVYASV
CEECCEEEEEHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCCCEEEEE
GVHPDHEDMHEPTLAELVELAAHPKVVAIGETGLDYYRLEGRSIDDMEWQRERFRTHIRA
CCCCCHHHCCCCHHHHHHHHHCCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHHHH
ATATMKPLIIHTRSSSEDTLRIMAEERADVPGGVMHCFTEPWSVAEQALAQNFHISLSGI
HHHHCCEEEEEECCCCCHHHHHEEHHCCCCCCHHHHHHCCCHHHHHHHHHHCCEEEEEEE
VTFKSATDVQDVARRVPLDRLLIETDSPYLAPVPYRGKPNEPAYVSHVGRFIASERGIAV
EEECCCCCHHHHHHHCCHHHEEEECCCCEECCCCCCCCCCCCHHHHHHHHHHHCCCCCEE
EALADATTQNFFRLFKIAR
HHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]