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The map label for this gene is exbD1 [H]

Identifier: 78065825

GI number: 78065825

Start: 1309464

End: 1309895

Strand: Reverse

Name: exbD1 [H]

Synonym: Bcep18194_A4354

Alternate gene names: 78065825

Gene position: 1309895-1309464 (Counterclockwise)

Preceding gene: 78065826

Following gene: 78065824

Centisome position: 35.46

GC content: 65.05

Gene sequence:

>432_bases
ATGGCCATGACCGTAGGCCCGCGCGAGGGCGCCGAGCACGACGAGACCATGTCGTCCATCAACACGACGCCACTGGTCGA
CGTGATGCTGGTGCTGCTGATCATCTTCCTCATCACGATTCCGGTGGTCTCGCACACCGTGCCGGTCACGCTGCCCAAGG
AAGCCGTGCAGCCGCTGCAAACGACCCCGCAGAACGTGATTCTCGCCGTGACGAAAGAAGGCGACGTGTTCTGGGACGAA
CGGCGCGTACCGGACGCGGCCACGCTCGTCGAGAAACTCAAGGCGGTGGCCGTGCAATCGCCGCAACCGGAAGTCCATAT
CCGCGGCGATCTCGACGCGCACTACGCCGCGATCGGCCGGGTCGTGTTTGCCTGCCAGCGGGCGGGCATCGTCAAGGTCG
ACTTCATCACCGAACCGCCGCCGCGCCAATGA

Upstream 100 bases:

>100_bases
GTTTTCGACGGAATTGCACATCGTCCTCCTGACCGGCACGACCACGGCCGCCGCCGCCGCCGCGACCAAGGCCGCCGCCC
TCACCCGCGTGGGGTAAGCC

Downstream 100 bases:

>100_bases
TTCGTCCACACCGACAAGGAGACCCGAGATGGCCATGACGATGCCCACCGGCAACGCCGACGAACCCGACGTGATGATCG
AGATCAACACCACACCGCTC

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 142

Protein sequence:

>143_residues
MAMTVGPREGAEHDETMSSINTTPLVDVMLVLLIIFLITIPVVSHTVPVTLPKEAVQPLQTTPQNVILAVTKEGDVFWDE
RRVPDAATLVEKLKAVAVQSPQPEVHIRGDLDAHYAAIGRVVFACQRAGIVKVDFITEPPPRQ

Sequences:

>Translated_143_residues
MAMTVGPREGAEHDETMSSINTTPLVDVMLVLLIIFLITIPVVSHTVPVTLPKEAVQPLQTTPQNVILAVTKEGDVFWDE
RRVPDAATLVEKLKAVAVQSPQPEVHIRGDLDAHYAAIGRVVFACQRAGIVKVDFITEPPPRQ
>Mature_142_residues
AMTVGPREGAEHDETMSSINTTPLVDVMLVLLIIFLITIPVVSHTVPVTLPKEAVQPLQTTPQNVILAVTKEGDVFWDER
RVPDAATLVEKLKAVAVQSPQPEVHIRGDLDAHYAAIGRVVFACQRAGIVKVDFITEPPPRQ

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=138, Percent_Identity=30.4347826086957, Blast_Score=63, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15623; Mature: 15492

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMTVGPREGAEHDETMSSINTTPLVDVMLVLLIIFLITIPVVSHTVPVTLPKEAVQPLQ
CCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
TTPQNVILAVTKEGDVFWDERRVPDAATLVEKLKAVAVQSPQPEVHIRGDLDAHYAAIGR
CCCCCEEEEEECCCCEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHH
VVFACQRAGIVKVDFITEPPPRQ
HHHHHHHCCEEEEEEECCCCCCC
>Mature Secondary Structure 
AMTVGPREGAEHDETMSSINTTPLVDVMLVLLIIFLITIPVVSHTVPVTLPKEAVQPLQ
CCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
TTPQNVILAVTKEGDVFWDERRVPDAATLVEKLKAVAVQSPQPEVHIRGDLDAHYAAIGR
CCCCCEEEEEECCCCEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHH
VVFACQRAGIVKVDFITEPPPRQ
HHHHHHHCCEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9371459 [H]