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The map label for this gene is exbD1 [H]

Identifier: 78065824

GI number: 78065824

Start: 1309007

End: 1309435

Strand: Reverse

Name: exbD1 [H]

Synonym: Bcep18194_A4353

Alternate gene names: 78065824

Gene position: 1309435-1309007 (Counterclockwise)

Preceding gene: 78065825

Following gene: 78065823

Centisome position: 35.45

GC content: 65.73

Gene sequence:

>429_bases
ATGGCCATGACGATGCCCACCGGCAACGCCGACGAACCCGACGTGATGATCGAGATCAACACCACACCGCTCATCGACGT
GATGCTGGTCCTGCTCATCATGCTGATCCTCACCATTCCCATCCAGACGAACGCGGTGAAGCTGGACATGCCGACCGGCG
CGCCGCCGTCGCAACCGCAGGCACCGCCGGTGGTGCAGATCGATATCGCGGCCGACGGCACCATCGCGTGGAATGGCGAG
ACGCTGGGTTCGCGCGAGCAACTGGAAACGCGCTTGCACGACGTCGCCGTCAACCCCGCGCCGACGGAACTGCATTTGCG
GCCCGACAAGGCGGCGCCTTACCGCGCCGTCGCGATGGTCATGGCGTCCGCGCAGCGGCTCGGCGCGAACCGCATCGGGC
TCGTGGGCAACGAGCAGTTCATGCAGTAA

Upstream 100 bases:

>100_bases
GTCGTGTTTGCCTGCCAGCGGGCGGGCATCGTCAAGGTCGACTTCATCACCGAACCGCCGCCGCGCCAATGATTCGTCCA
CACCGACAAGGAGACCCGAG

Downstream 100 bases:

>100_bases
CCGCCTTCTCATCACGGAGCCCTCATGTTCGACTCCAACCCCGACGTGCTCGCCCCCGTGGCGGCACAAAGCCCGCCATC
GGAATCACCCGCCGGACCAC

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 141

Protein sequence:

>142_residues
MAMTMPTGNADEPDVMIEINTTPLIDVMLVLLIMLILTIPIQTNAVKLDMPTGAPPSQPQAPPVVQIDIAADGTIAWNGE
TLGSREQLETRLHDVAVNPAPTELHLRPDKAAPYRAVAMVMASAQRLGANRIGLVGNEQFMQ

Sequences:

>Translated_142_residues
MAMTMPTGNADEPDVMIEINTTPLIDVMLVLLIMLILTIPIQTNAVKLDMPTGAPPSQPQAPPVVQIDIAADGTIAWNGE
TLGSREQLETRLHDVAVNPAPTELHLRPDKAAPYRAVAMVMASAQRLGANRIGLVGNEQFMQ
>Mature_141_residues
AMTMPTGNADEPDVMIEINTTPLIDVMLVLLIMLILTIPIQTNAVKLDMPTGAPPSQPQAPPVVQIDIAADGTIAWNGET
LGSREQLETRLHDVAVNPAPTELHLRPDKAAPYRAVAMVMASAQRLGANRIGLVGNEQFMQ

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=130, Percent_Identity=33.8461538461538, Blast_Score=71, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15260; Mature: 15129

Theoretical pI: Translated: 4.32; Mature: 4.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
7.0 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
6.4 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMTMPTGNADEPDVMIEINTTPLIDVMLVLLIMLILTIPIQTNAVKLDMPTGAPPSQPQ
CEEECCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCC
APPVVQIDIAADGTIAWNGETLGSREQLETRLHDVAVNPAPTELHLRPDKAAPYRAVAMV
CCCEEEEEECCCCEEEECCCCCCCHHHHHHHHHHEECCCCCCEEEECCCCCCCHHHHHHH
MASAQRLGANRIGLVGNEQFMQ
HHHHHHCCCCCEEEECCHHHCC
>Mature Secondary Structure 
AMTMPTGNADEPDVMIEINTTPLIDVMLVLLIMLILTIPIQTNAVKLDMPTGAPPSQPQ
EEECCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCC
APPVVQIDIAADGTIAWNGETLGSREQLETRLHDVAVNPAPTELHLRPDKAAPYRAVAMV
CCCEEEEEECCCCEEEECCCCCCCHHHHHHHHHHEECCCCCCEEEECCCCCCCHHHHHHH
MASAQRLGANRIGLVGNEQFMQ
HHHHHHCCCCCEEEECCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9371459 [H]