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The map label for this gene is yciK [H]

Identifier: 78048381

GI number: 78048381

Start: 3215925

End: 3216668

Strand: Reverse

Name: yciK [H]

Synonym: XCV2825

Alternate gene names: 78048381

Gene position: 3216668-3215925 (Counterclockwise)

Preceding gene: 78048382

Following gene: 78048380

Centisome position: 62.12

GC content: 70.03

Gene sequence:

>744_bases
GTGAGTTCGGTGCAGGCCCAGCCGCAGTCGGCTGCCTTGTCGGGGCGCGTCGTGCTGATCACCGGCGCCGCCGGTGGCCT
CGGCGCCGCCGCGGCGCAGGCATGCGCGGCTGCCGGCGCCACGGTAGTGCTGCTTGGTCGCAAGGTGCGCCCGCTGGAGC
GCGTCTACGACGCGGTTGCAGCGCTGGGTGCCGAGCCGCTGTTGTATCCGCTGGATCTGGCCGGCGCCACCCCGGACGAC
TACGCCGCGCTTGCGCAACGGGTGCAGACCGAGCTTGGTGGCCTGCATGGTCTGCTGCAGTGCGCTGCCGACTTTTCCGG
CCTGACGCCAACCGAACTCGTCTCACCCGCTGATTTCGCACGCACCCTGCATGTCAACCTGACCGCGCGCGCCTGGCTGA
CCCAGGCATGCCTGCCGCTGTTGCGGCAGCAGGACGATGCGGCAGCTGTCTTCGTGGTGGACGACCCCGCGCGCGTGGGT
CAGGCCTATTGGGGGGCGTATGGCGCCGCCCAACATGCGCAGCGCGGCTTGATCGCCACCTTGCATCATGAAACCGCCGC
CGGCCCGGTCCGCGTCGGCGGCCTGCAGCCCGGCCCGATGCGCACCGCATTGCGCGCACGCGCTTTCACCCATCACGAAG
ACAACGACGCGGTCGATGCCGCACGTTACGCACCTGCATGCGTCAGCATGCTGTCAGCCGCAGGGGCGACGCATCGCGGT
GCGATCTGGAGTCCGCAGGTATGA

Upstream 100 bases:

>100_bases
AGCTGTTCATCCATGGCGAGCTGATCGGCGGCTGCGACATCACGCTGGAACTGTTCGAAGCCGGCGAGCTCAAGCGCATC
GTCAGCGAGGCGTACCAGCC

Downstream 100 bases:

>100_bases
CCATTCTTTCTGCGGCGCTGCTGCTGTTTCTGATTCTCGACCCGCTGGGCAACATTCCAGTGTTCCTCAGCGTGCTCAAG
CCGCTGCCGCCCAAGCGCCA

Product: short chain dehydrogenase precursor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 246

Protein sequence:

>247_residues
MSSVQAQPQSAALSGRVVLITGAAGGLGAAAAQACAAAGATVVLLGRKVRPLERVYDAVAALGAEPLLYPLDLAGATPDD
YAALAQRVQTELGGLHGLLQCAADFSGLTPTELVSPADFARTLHVNLTARAWLTQACLPLLRQQDDAAAVFVVDDPARVG
QAYWGAYGAAQHAQRGLIATLHHETAAGPVRVGGLQPGPMRTALRARAFTHHEDNDAVDAARYAPACVSMLSAAGATHRG
AIWSPQV

Sequences:

>Translated_247_residues
MSSVQAQPQSAALSGRVVLITGAAGGLGAAAAQACAAAGATVVLLGRKVRPLERVYDAVAALGAEPLLYPLDLAGATPDD
YAALAQRVQTELGGLHGLLQCAADFSGLTPTELVSPADFARTLHVNLTARAWLTQACLPLLRQQDDAAAVFVVDDPARVG
QAYWGAYGAAQHAQRGLIATLHHETAAGPVRVGGLQPGPMRTALRARAFTHHEDNDAVDAARYAPACVSMLSAAGATHRG
AIWSPQV
>Mature_246_residues
SSVQAQPQSAALSGRVVLITGAAGGLGAAAAQACAAAGATVVLLGRKVRPLERVYDAVAALGAEPLLYPLDLAGATPDDY
AALAQRVQTELGGLHGLLQCAADFSGLTPTELVSPADFARTLHVNLTARAWLTQACLPLLRQQDDAAAVFVVDDPARVGQ
AYWGAYGAAQHAQRGLIATLHHETAAGPVRVGGLQPGPMRTALRARAFTHHEDNDAVDAARYAPACVSMLSAAGATHRGA
IWSPQV

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Escherichia coli, GI1787526, Length=204, Percent_Identity=37.2549019607843, Blast_Score=114, Evalue=7e-27,
Organism=Drosophila melanogaster, GI21358495, Length=214, Percent_Identity=30.8411214953271, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI21355319, Length=206, Percent_Identity=27.6699029126214, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI281364892, Length=189, Percent_Identity=29.1005291005291, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 25409; Mature: 25278

Theoretical pI: Translated: 6.94; Mature: 6.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSVQAQPQSAALSGRVVLITGAAGGLGAAAAQACAAAGATVVLLGRKVRPLERVYDAVA
CCCCCCCCCHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHH
ALGAEPLLYPLDLAGATPDDYAALAQRVQTELGGLHGLLQCAADFSGLTPTELVSPADFA
HHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHH
RTLHVNLTARAWLTQACLPLLRQQDDAAAVFVVDDPARVGQAYWGAYGAAQHAQRGLIAT
EEEEEEEHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCEEE
LHHETAAGPVRVGGLQPGPMRTALRARAFTHHEDNDAVDAARYAPACVSMLSAAGATHRG
ECCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
AIWSPQV
CCCCCCC
>Mature Secondary Structure 
SSVQAQPQSAALSGRVVLITGAAGGLGAAAAQACAAAGATVVLLGRKVRPLERVYDAVA
CCCCCCCCHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHH
ALGAEPLLYPLDLAGATPDDYAALAQRVQTELGGLHGLLQCAADFSGLTPTELVSPADFA
HHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHH
RTLHVNLTARAWLTQACLPLLRQQDDAAAVFVVDDPARVGQAYWGAYGAAQHAQRGLIAT
EEEEEEEHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCEEE
LHHETAAGPVRVGGLQPGPMRTALRARAFTHHEDNDAVDAARYAPACVSMLSAAGATHRG
ECCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
AIWSPQV
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on the CH-OH group of donors; With NAD or NADP as acceptor [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 1885549 [H]