| Definition | Xanthomonas campestris pv. vesicatoria str. 85-10 chromosome, complete genome. |
|---|---|
| Accession | NC_007508 |
| Length | 5,178,466 |
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The map label for this gene is grxD [H]
Identifier: 78048382
GI number: 78048382
Start: 3216665
End: 3216985
Strand: Reverse
Name: grxD [H]
Synonym: XCV2826
Alternate gene names: 78048382
Gene position: 3216985-3216665 (Counterclockwise)
Preceding gene: 78048384
Following gene: 78048381
Centisome position: 62.12
GC content: 61.99
Gene sequence:
>321_bases ATGCCGGTGATGGAACGGATCCAGGCCGAAGTCGAACAACACCCGATCGTGCTGTTCATGAAAGGCACCCCGCAATTTCC GATGTGCGAGTTTTCCAGTCGCGCCGTGCAGGCCCTGGTGGCCGCCGGTGCCGACCAACTGCGTACGGTCAACGTGTTGG AAGAGCCTGAAGTGCGCGCCAATCTGCCGCGCTACTCCAACTGGCCCACGTTTCCGCAGCTGTTCATCCATGGCGAGCTG ATCGGCGGCTGCGACATCACGCTGGAACTGTTCGAAGCCGGCGAGCTCAAGCGCATCGTCAGCGAGGCGTACCAGCCGTG A
Upstream 100 bases:
>100_bases GAGTGCGGCGATAGGTCGCGCTGAAGGCTTACAATGCGCGCCTTTGCGGAAGTTTATCCGACCGGCGGTCGGGCCTGCCG CTCCCAGTCAGGAGAGTCCA
Downstream 100 bases:
>100_bases GTTCGGTGCAGGCCCAGCCGCAGTCGGCTGCCTTGTCGGGGCGCGTCGTGCTGATCACCGGCGCCGCCGGTGGCCTCGGC GCCGCCGCGGCGCAGGCATG
Product: glutaredoxin-related protein
Products: NA
Alternate protein names: Grx4; Monothiol glutaredoxin [H]
Number of amino acids: Translated: 106; Mature: 105
Protein sequence:
>106_residues MPVMERIQAEVEQHPIVLFMKGTPQFPMCEFSSRAVQALVAAGADQLRTVNVLEEPEVRANLPRYSNWPTFPQLFIHGEL IGGCDITLELFEAGELKRIVSEAYQP
Sequences:
>Translated_106_residues MPVMERIQAEVEQHPIVLFMKGTPQFPMCEFSSRAVQALVAAGADQLRTVNVLEEPEVRANLPRYSNWPTFPQLFIHGEL IGGCDITLELFEAGELKRIVSEAYQP >Mature_105_residues PVMERIQAEVEQHPIVLFMKGTPQFPMCEFSSRAVQALVAAGADQLRTVNVLEEPEVRANLPRYSNWPTFPQLFIHGELI GGCDITLELFEAGELKRIVSEAYQP
Specific function: Monothiol glutaredoxin involved in the biogenesis of iron-sulfur clusters [H]
COG id: COG0278
COG function: function code O; Glutaredoxin-related protein
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 glutaredoxin domain [H]
Homologues:
Organism=Homo sapiens, GI42516576, Length=92, Percent_Identity=44.5652173913043, Blast_Score=99, Evalue=7e-22, Organism=Homo sapiens, GI95113651, Length=92, Percent_Identity=45.6521739130435, Blast_Score=89, Evalue=9e-19, Organism=Escherichia coli, GI1787943, Length=100, Percent_Identity=50, Blast_Score=126, Evalue=3e-31, Organism=Caenorhabditis elegans, GI17556042, Length=101, Percent_Identity=37.6237623762376, Blast_Score=83, Evalue=3e-17, Organism=Caenorhabditis elegans, GI71988153, Length=85, Percent_Identity=44.7058823529412, Blast_Score=82, Evalue=6e-17, Organism=Caenorhabditis elegans, GI71988159, Length=86, Percent_Identity=40.6976744186046, Blast_Score=76, Evalue=4e-15, Organism=Saccharomyces cerevisiae, GI6325198, Length=103, Percent_Identity=42.7184466019417, Blast_Score=98, Evalue=2e-22, Organism=Saccharomyces cerevisiae, GI6320303, Length=90, Percent_Identity=40, Blast_Score=73, Evalue=7e-15, Organism=Saccharomyces cerevisiae, GI6321022, Length=89, Percent_Identity=42.6966292134831, Blast_Score=72, Evalue=1e-14, Organism=Drosophila melanogaster, GI24642023, Length=86, Percent_Identity=43.0232558139535, Blast_Score=86, Evalue=4e-18, Organism=Drosophila melanogaster, GI19921242, Length=96, Percent_Identity=39.5833333333333, Blast_Score=79, Evalue=4e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002109 - InterPro: IPR014434 - InterPro: IPR004480 - InterPro: IPR012336 - InterPro: IPR012335 [H]
Pfam domain/function: PF00462 Glutaredoxin [H]
EC number: NA
Molecular weight: Translated: 11943; Mature: 11812
Theoretical pI: Translated: 4.49; Mature: 4.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPVMERIQAEVEQHPIVLFMKGTPQFPMCEFSSRAVQALVAAGADQLRTVNVLEEPEVRA CCHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCHHHHEEECCCCCCCCCC NLPRYSNWPTFPQLFIHGELIGGCDITLELFEAGELKRIVSEAYQP CCCCCCCCCCCCEEEEECEEECCCCEEEEECCCCHHHHHHHHHCCC >Mature Secondary Structure PVMERIQAEVEQHPIVLFMKGTPQFPMCEFSSRAVQALVAAGADQLRTVNVLEEPEVRA CHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCHHHHEEECCCCCCCCCC NLPRYSNWPTFPQLFIHGELIGGCDITLELFEAGELKRIVSEAYQP CCCCCCCCCCCCEEEEECEEECCCCEEEEECCCCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]