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The map label for this gene is nlpD [C]

Identifier: 77457358

GI number: 77457358

Start: 1307431

End: 1308312

Strand: Direct

Name: nlpD [C]

Synonym: Pfl01_1131

Alternate gene names: 77457358

Gene position: 1307431-1308312 (Clockwise)

Preceding gene: 77457357

Following gene: 77457359

Centisome position: 20.31

GC content: 57.26

Gene sequence:

>882_bases
GTGAGTCTCACAGTCATTGCGCAGCGTATGGGTAACACGAGCTTTCAGCGCCTGGTGACTGGCCTTGTCTTGAGCACCTT
GCTGGTCGGTTGCTCCAGCACAAAATCGAGCAACGTTCGGGTCGTGGATCGCAACAATGCGGTGGCCCAGCGTCCGGTCG
TGACGACCGGGCAGTATGTAGTCCGTCCGGGCGATACCTTGTTTTCCATCGCTTTTCGCTACGGCTGGGACTACAAAGCC
CTCGCCGCCCGGAACAACATTCCTACGCCATACACGATCCATCCGGGTCAGACGATTCGCTTCGACGGCCGTACCGGTTC
AACGTCGACTGCGGTCGTCAGCAACTCCGGTTCTTCAGCGTCTTCGTCCAGCAAAACCACGGTTATCCGGCGCCAGGCAA
ATGGCACGACAACCACCACGACCACGGGTTCCGGCGCAGCTTCGACGACGGTTGTACCGTCCGTCGCCAACAAGCAAACA
CCCGCTCCGCTGCCTCCACCGGGCCCGGCCCCGACCGGCTGGGGATGGCCATCTAATGGCATTCTCATTGGAAAATTCTC
TTCAAACGGTAGTTTGAATAAAGGAATTGATATCGCCGGAGATTTGGGACAGCCTGTTTTAGCTGCGTCTGATGGGACGG
TGGTATACGCCGGGAGTGGCTTAAGGGGCTACGGCGAATTGGTCATCATCAAACACAGCGAAACCTACGTCAGTGCTTAC
GGACACAACCGTCGGCTGTTGGTACGGGAGGGGCAGCAGGTCAAGGTCGGACAGACAATTGCCGAAATGGGGTCAACGGG
TACAGACCGGGTGAAACTGCATTTTGAGATTCGCCGACAAGGTAAACCTGTAGATCCGCTGCAGTTCCTGCCAAGACGTT
GA

Upstream 100 bases:

>100_bases
CTTCTATAAAGGTAAAGCCGGTTGCGCTCGTTATACTTGCGAAGTTTCATGCCGGAATCGGCATTCCAAATTTTTTCAGC
CACCACAAAGGGAGCGGCGG

Downstream 100 bases:

>100_bases
TTTGCAGACCAGCCTGTTCCGTCACGTAGAGGGGACAGGCTCCAGCGTTGCCAAGGATAAAGGCGCCGCTTGAGCTTGGG
GTCGAACTCACCAAAGGACT

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 292

Protein sequence:

>293_residues
MSLTVIAQRMGNTSFQRLVTGLVLSTLLVGCSSTKSSNVRVVDRNNAVAQRPVVTTGQYVVRPGDTLFSIAFRYGWDYKA
LAARNNIPTPYTIHPGQTIRFDGRTGSTSTAVVSNSGSSASSSSKTTVIRRQANGTTTTTTTGSGAASTTVVPSVANKQT
PAPLPPPGPAPTGWGWPSNGILIGKFSSNGSLNKGIDIAGDLGQPVLAASDGTVVYAGSGLRGYGELVIIKHSETYVSAY
GHNRRLLVREGQQVKVGQTIAEMGSTGTDRVKLHFEIRRQGKPVDPLQFLPRR

Sequences:

>Translated_293_residues
MSLTVIAQRMGNTSFQRLVTGLVLSTLLVGCSSTKSSNVRVVDRNNAVAQRPVVTTGQYVVRPGDTLFSIAFRYGWDYKA
LAARNNIPTPYTIHPGQTIRFDGRTGSTSTAVVSNSGSSASSSSKTTVIRRQANGTTTTTTTGSGAASTTVVPSVANKQT
PAPLPPPGPAPTGWGWPSNGILIGKFSSNGSLNKGIDIAGDLGQPVLAASDGTVVYAGSGLRGYGELVIIKHSETYVSAY
GHNRRLLVREGQQVKVGQTIAEMGSTGTDRVKLHFEIRRQGKPVDPLQFLPRR
>Mature_292_residues
SLTVIAQRMGNTSFQRLVTGLVLSTLLVGCSSTKSSNVRVVDRNNAVAQRPVVTTGQYVVRPGDTLFSIAFRYGWDYKAL
AARNNIPTPYTIHPGQTIRFDGRTGSTSTAVVSNSGSSASSSSKTTVIRRQANGTTTTTTTGSGAASTTVVPSVANKQTP
APLPPPGPAPTGWGWPSNGILIGKFSSNGSLNKGIDIAGDLGQPVLAASDGTVVYAGSGLRGYGELVIIKHSETYVSAYG
HNRRLLVREGQQVKVGQTIAEMGSTGTDRVKLHFEIRRQGKPVDPLQFLPRR

Specific function: May Be Involved In Stationary-Phase Survival. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=259, Percent_Identity=40.9266409266409, Blast_Score=188, Evalue=4e-49,
Organism=Escherichia coli, GI87082174, Length=277, Percent_Identity=37.9061371841155, Blast_Score=166, Evalue=2e-42,
Organism=Escherichia coli, GI87082297, Length=128, Percent_Identity=41.40625, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI87081989, Length=103, Percent_Identity=42.7184466019417, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 30944; Mature: 30813

Theoretical pI: Translated: 11.13; Mature: 11.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLTVIAQRMGNTSFQRLVTGLVLSTLLVGCSSTKSSNVRVVDRNNAVAQRPVVTTGQYV
CCCEEEEHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCEEECCCEE
VRPGDTLFSIAFRYGWDYKALAARNNIPTPYTIHPGQTIRFDGRTGSTSTAVVSNSGSSA
ECCCCCEEEEEECCCCCEEEEECCCCCCCCEEECCCCEEEECCCCCCCCEEEEECCCCCC
SSSSKTTVIRRQANGTTTTTTTGSGAASTTVVPSVANKQTPAPLPPPGPAPTGWGWPSNG
CCCCCEEEEEEECCCCEEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
ILIGKFSSNGSLNKGIDIAGDLGQPVLAASDGTVVYAGSGLRGYGELVIIKHSETYVSAY
EEEEEECCCCCCCCCCEEECCCCCCEEEECCCCEEEECCCCCCCCCEEEEEECCEEEEEC
GHNRRLLVREGQQVKVGQTIAEMGSTGTDRVKLHFEIRRQGKPVDPLQFLPRR
CCCCEEEEECCCEEEHHHHHHHHCCCCCCEEEEEEEEECCCCCCCHHHHCCCC
>Mature Secondary Structure 
SLTVIAQRMGNTSFQRLVTGLVLSTLLVGCSSTKSSNVRVVDRNNAVAQRPVVTTGQYV
CCEEEEHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCEEECCCEE
VRPGDTLFSIAFRYGWDYKALAARNNIPTPYTIHPGQTIRFDGRTGSTSTAVVSNSGSSA
ECCCCCEEEEEECCCCCEEEEECCCCCCCCEEECCCCEEEECCCCCCCCEEEEECCCCCC
SSSSKTTVIRRQANGTTTTTTTGSGAASTTVVPSVANKQTPAPLPPPGPAPTGWGWPSNG
CCCCCEEEEEEECCCCEEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
ILIGKFSSNGSLNKGIDIAGDLGQPVLAASDGTVVYAGSGLRGYGELVIIKHSETYVSAY
EEEEEECCCCCCCCCCEEECCCCCCEEEECCCCEEEECCCCCCCCCEEEEEECCEEEEEC
GHNRRLLVREGQQVKVGQTIAEMGSTGTDRVKLHFEIRRQGKPVDPLQFLPRR
CCCCEEEEECCCEEEHHHHHHHHCCCCCCEEEEEEEEECCCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7959068; 10984043 [H]