| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is yhiQ [C]
Identifier: 77457304
GI number: 77457304
Start: 1244943
End: 1245788
Strand: Direct
Name: yhiQ [C]
Synonym: Pfl01_1077
Alternate gene names: 77457304
Gene position: 1244943-1245788 (Clockwise)
Preceding gene: 77457302
Following gene: 77457306
Centisome position: 19.34
GC content: 64.18
Gene sequence:
>846_bases ATGCGCGTTGATTGGGTTATCGGCGGATTTTGCCGATCCTTAACTTTTTTGAGCGTGTTTTCCATGATTGAGCAACCCGC GGCCTGCCGCATCCATGTCGAGGCCCTCGGCCCGACGTTCGAAGCGCAGGCCGAGCAGTGGGCGCAACGCCTGAACCTGC CGTTGCAGGTGGCTGACGGCGAGTTTGCCCTGCAGGTCGGCGAGCAGGGTTTGCAGCTACAACAACTGGGACCGGATGCG CCGGGGCCGGTGCGGGTCGACTTCGTCGAGGGTGGCGCGGCCCATCGCCGGTTGTACGGCGGTGGCAGCGGACAGATGAT CGCCAAGGCGGTCGGCATCGCCCAGGGCGTACGTCCGCGGGTGCTGGATGCCACGGCGGGGCTGGGCAAGGATGCCTTCG TGCTGGCCAGTCTCGGCTGCGAGATGAGCCTGATCGAGCGCCAGCCATTGATCGGCGCGTTGCTGGAGGATGGTCTGGCC CGAGCGGCGGAAGACTTCGATGTGGCGCCGATCGTGGCGCGGATGAAGCTGCTCAAGGGCAACTCCATCGAGGTGATGCG CAATTGGGAGGGCGAACCCCCGCAGGTGATCTACCTCGATCCGATGTTCCCGCATCGTGAGAAAACCGCGCTGGTGAAGA AGGAAATGCGCCTGTTTCGCCCGTTGGTGGGCGATGATCCGGATGCACCGGCCTTGCTGGAAGCGGCGTTGGCACTGGCC ACCCACCGGGTGGTGGTCAAGCGACCGCGCAAGGCGCCGTGTATCGAAGGGCCGAAACCGAGTCATGCGCTGGACGGCAA ATCCAGCCGCTATGACATCTACCCGAAGAAAGCGCTCAAGGCCTGA
Upstream 100 bases:
>100_bases GAGTGTTATGACGGCTGAAATCGCCTGTGGGCGAAAGGTAGCCAATCGATGTGGGAAGAATGCCTGACATTTTTTTCGGT TGACGCTCAGCTCTGGCAAA
Downstream 100 bases:
>100_bases GCCGTCGCATAAGAAAATCCCACGCATGGCGTGGGATTTTTGTTTTCAGGGGCGATAGGCCCGCATGAACAGCCCGACCA CTTCCTGCACATGACTTTCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 281; Mature: 281
Protein sequence:
>281_residues MRVDWVIGGFCRSLTFLSVFSMIEQPAACRIHVEALGPTFEAQAEQWAQRLNLPLQVADGEFALQVGEQGLQLQQLGPDA PGPVRVDFVEGGAAHRRLYGGGSGQMIAKAVGIAQGVRPRVLDATAGLGKDAFVLASLGCEMSLIERQPLIGALLEDGLA RAAEDFDVAPIVARMKLLKGNSIEVMRNWEGEPPQVIYLDPMFPHREKTALVKKEMRLFRPLVGDDPDAPALLEAALALA THRVVVKRPRKAPCIEGPKPSHALDGKSSRYDIYPKKALKA
Sequences:
>Translated_281_residues MRVDWVIGGFCRSLTFLSVFSMIEQPAACRIHVEALGPTFEAQAEQWAQRLNLPLQVADGEFALQVGEQGLQLQQLGPDA PGPVRVDFVEGGAAHRRLYGGGSGQMIAKAVGIAQGVRPRVLDATAGLGKDAFVLASLGCEMSLIERQPLIGALLEDGLA RAAEDFDVAPIVARMKLLKGNSIEVMRNWEGEPPQVIYLDPMFPHREKTALVKKEMRLFRPLVGDDPDAPALLEAALALA THRVVVKRPRKAPCIEGPKPSHALDGKSSRYDIYPKKALKA >Mature_281_residues MRVDWVIGGFCRSLTFLSVFSMIEQPAACRIHVEALGPTFEAQAEQWAQRLNLPLQVADGEFALQVGEQGLQLQQLGPDA PGPVRVDFVEGGAAHRRLYGGGSGQMIAKAVGIAQGVRPRVLDATAGLGKDAFVLASLGCEMSLIERQPLIGALLEDGLA RAAEDFDVAPIVARMKLLKGNSIEVMRNWEGEPPQVIYLDPMFPHREKTALVKKEMRLFRPLVGDDPDAPALLEAALALA THRVVVKRPRKAPCIEGPKPSHALDGKSSRYDIYPKKALKA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0341 family [H]
Homologues:
Organism=Escherichia coli, GI1789912, Length=217, Percent_Identity=49.3087557603687, Blast_Score=193, Evalue=1e-50,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007536 [H]
Pfam domain/function: PF04445 DUF548 [H]
EC number: NA
Molecular weight: Translated: 30501; Mature: 30501
Theoretical pI: Translated: 7.98; Mature: 7.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRVDWVIGGFCRSLTFLSVFSMIEQPAACRIHVEALGPTFEAQAEQWAQRLNLPLQVADG CEEEEEEHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHCCCCEEECCC EFALQVGEQGLQLQQLGPDAPGPVRVDFVEGGAAHRRLYGGGSGQMIAKAVGIAQGVRPR CEEEEECCCCCEEHHCCCCCCCCEEEEEECCCCHHHEEECCCCCHHHHHHHHHHCCCCCC VLDATAGLGKDAFVLASLGCEMSLIERQPLIGALLEDGLARAAEDFDVAPIVARMKLLKG EEHHHCCCCCCHHEEHHCCCCHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC NSIEVMRNWEGEPPQVIYLDPMFPHREKTALVKKEMRLFRPLVGDDPDAPALLEAALALA CCEEEEECCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH THRVVVKRPRKAPCIEGPKPSHALDGKSSRYDIYPKKALKA HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEECCCHHHHCC >Mature Secondary Structure MRVDWVIGGFCRSLTFLSVFSMIEQPAACRIHVEALGPTFEAQAEQWAQRLNLPLQVADG CEEEEEEHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHCCCCEEECCC EFALQVGEQGLQLQQLGPDAPGPVRVDFVEGGAAHRRLYGGGSGQMIAKAVGIAQGVRPR CEEEEECCCCCEEHHCCCCCCCCEEEEEECCCCHHHEEECCCCCHHHHHHHHHHCCCCCC VLDATAGLGKDAFVLASLGCEMSLIERQPLIGALLEDGLARAAEDFDVAPIVARMKLLKG EEHHHCCCCCCHHEEHHCCCCHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC NSIEVMRNWEGEPPQVIYLDPMFPHREKTALVKKEMRLFRPLVGDDPDAPALLEAALALA CCEEEEECCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH THRVVVKRPRKAPCIEGPKPSHALDGKSSRYDIYPKKALKA HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEECCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA