Click here to switch to the map view.

The map label for this gene is rhaS [H]

Identifier: 77457159

GI number: 77457159

Start: 1083488

End: 1084363

Strand: Reverse

Name: rhaS [H]

Synonym: Pfl01_0932

Alternate gene names: 77457159

Gene position: 1084363-1083488 (Counterclockwise)

Preceding gene: 77457162

Following gene: 77457152

Centisome position: 16.84

GC content: 61.76

Gene sequence:

>876_bases
ATGGCCGCCATCGATACCCTGCAAGTCTTTCAAGCCCTCAACAATTCGCTCAATGCACGCCTGGTGCACAGCGCCGAGTT
GGGTGACGGCCTGTCTGCAGCTTTGTGGACCAATCACCACGACGCCCAGGAATACGAAGCGCCGAGCCATCACACCCTCT
CCTGCTACATCGCCGGCGGCACCGGCACCTTCCGTCGTGGCGAACCCGGCCACAAGGGCGGCCCGGACAAGCTGTGCATC
CTGCCGGCCGACCACGAATCGGGTTGGGTCATTAACGGCGACATTCGTCTGGCTCACCTGTATTTCAGCGCCGAACAATT
TGCCCTGGGGTGCGTCACGCTGCTGGATCGCGAGCCCCGGGAAATGCAGCTTCGCGAACAGACGTTTCTGGAAGATCCAC
AACAGGCCCAACGGTTTCGCCAGTTACTGACCTTGAACTGGGACGAACCCGGCGAACGTCTGCTGACCAGCAGCCTGGCC
CACGAACTGATCAGCCATACCCTGTTGAGTCAGGTCGGGGTACGTCAGGGCTTGCGTCTCAAGGGTGGACTGGCGCCGCA
TCAACGTCGGCAACTGGTGGAATTCATCGACAGCCAACTGGCCGAGCCGATCAGCCTCGGGCAACTGGCCGGGTTGTGTG
CGTTGTCGGAATACCACTTTGCGCGGATGTTCCGGGTGAGCTTCGGTCTACCGCCGCATCAGTATGTGTTGGCACGGCGT
TTGAGCCGGGCCCGGGAGTTGTTGCGCGGGACAGCGTTGCCGTTGGGCGAGATTGCCCTGGCGTGCGGATTTGCCAGTGC
CAGCCATTTCACCAACCGCTTTCGCCAGGTGCTGGGTGGAACGCCCGGCGAGTATCGCCAGGCGTTTTTGCGCTGA

Upstream 100 bases:

>100_bases
ACTTTTTTCATGACTTGCGAAAACTTGCGGTTTTTAAGAGGCACAGGCTGGCAGCGCAGAATCTACGGAGTAGGATGCAA
GGCGTTGAAGAGAACCGACT

Downstream 100 bases:

>100_bases
TCAGAACTCCAGCGTGCTCGACAACAAAATCTGCCGCGAGTCGCCCATCGACACAAAGAACCGGCTCGCCGCCGAGGTGT
AGTAGGTGCGGTCGAACAGG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: L-rhamnose operon regulatory protein rhaS [H]

Number of amino acids: Translated: 291; Mature: 290

Protein sequence:

>291_residues
MAAIDTLQVFQALNNSLNARLVHSAELGDGLSAALWTNHHDAQEYEAPSHHTLSCYIAGGTGTFRRGEPGHKGGPDKLCI
LPADHESGWVINGDIRLAHLYFSAEQFALGCVTLLDREPREMQLREQTFLEDPQQAQRFRQLLTLNWDEPGERLLTSSLA
HELISHTLLSQVGVRQGLRLKGGLAPHQRRQLVEFIDSQLAEPISLGQLAGLCALSEYHFARMFRVSFGLPPHQYVLARR
LSRARELLRGTALPLGEIALACGFASASHFTNRFRQVLGGTPGEYRQAFLR

Sequences:

>Translated_291_residues
MAAIDTLQVFQALNNSLNARLVHSAELGDGLSAALWTNHHDAQEYEAPSHHTLSCYIAGGTGTFRRGEPGHKGGPDKLCI
LPADHESGWVINGDIRLAHLYFSAEQFALGCVTLLDREPREMQLREQTFLEDPQQAQRFRQLLTLNWDEPGERLLTSSLA
HELISHTLLSQVGVRQGLRLKGGLAPHQRRQLVEFIDSQLAEPISLGQLAGLCALSEYHFARMFRVSFGLPPHQYVLARR
LSRARELLRGTALPLGEIALACGFASASHFTNRFRQVLGGTPGEYRQAFLR
>Mature_290_residues
AAIDTLQVFQALNNSLNARLVHSAELGDGLSAALWTNHHDAQEYEAPSHHTLSCYIAGGTGTFRRGEPGHKGGPDKLCIL
PADHESGWVINGDIRLAHLYFSAEQFALGCVTLLDREPREMQLREQTFLEDPQQAQRFRQLLTLNWDEPGERLLTSSLAH
ELISHTLLSQVGVRQGLRLKGGLAPHQRRQLVEFIDSQLAEPISLGQLAGLCALSEYHFARMFRVSFGLPPHQYVLARRL
SRARELLRGTALPLGEIALACGFASASHFTNRFRQVLGGTPGEYRQAFLR

Specific function: Activates expression of the rhaBAD and rhaT operons [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains [H]

Homologues:

Organism=Escherichia coli, GI1790857, Length=99, Percent_Identity=36.3636363636364, Blast_Score=64, Evalue=8e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 32363; Mature: 32232

Theoretical pI: Translated: 7.43; Mature: 7.43

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAIDTLQVFQALNNSLNARLVHSAELGDGLSAALWTNHHDAQEYEAPSHHTLSCYIAGG
CCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHCCCCCHHHCCCCCCCEEEEEEECC
TGTFRRGEPGHKGGPDKLCILPADHESGWVINGDIRLAHLYFSAEQFALGCVTLLDREPR
CCCCCCCCCCCCCCCCCEEEEECCCCCCEEEECCEEEEEEEECHHHHHHHHHHHHCCCCH
EMQLREQTFLEDPQQAQRFRQLLTLNWDEPGERLLTSSLAHELISHTLLSQVGVRQGLRL
HHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
KGGLAPHQRRQLVEFIDSQLAEPISLGQLAGLCALSEYHFARMFRVSFGLPPHQYVLARR
CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
LSRARELLRGTALPLGEIALACGFASASHFTNRFRQVLGGTPGEYRQAFLR
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCC
>Mature Secondary Structure 
AAIDTLQVFQALNNSLNARLVHSAELGDGLSAALWTNHHDAQEYEAPSHHTLSCYIAGG
CCHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHCCCCCHHHCCCCCCCEEEEEEECC
TGTFRRGEPGHKGGPDKLCILPADHESGWVINGDIRLAHLYFSAEQFALGCVTLLDREPR
CCCCCCCCCCCCCCCCCEEEEECCCCCCEEEECCEEEEEEEECHHHHHHHHHHHHCCCCH
EMQLREQTFLEDPQQAQRFRQLLTLNWDEPGERLLTSSLAHELISHTLLSQVGVRQGLRL
HHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
KGGLAPHQRRQLVEFIDSQLAEPISLGQLAGLCALSEYHFARMFRVSFGLPPHQYVLARR
CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
LSRARELLRGTALPLGEIALACGFASASHFTNRFRQVLGGTPGEYRQAFLR
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA