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The map label for this gene is fecI [H]

Identifier: 77457152

GI number: 77457152

Start: 1076518

End: 1077012

Strand: Reverse

Name: fecI [H]

Synonym: Pfl01_0925

Alternate gene names: 77457152

Gene position: 1077012-1076518 (Counterclockwise)

Preceding gene: 77457159

Following gene: 77457151

Centisome position: 16.73

GC content: 63.43

Gene sequence:

>495_bases
ATGCCGTTGTCGTCCGCCCATCCTGTCGAATCGCTCTACCAGGCCCACCACAGCTGGCTCACCGGCTGGCTGCGGCGCAG
ACTCGGCTGCCCGGACAGCGCCGCCGACCTGGCCCAGGACACCTTCATTCGGCTGCTGACCGCCCGCGAGCCGGCGGTGA
TCATCGAGCCGCGCGCATTCCTCACCACCTTGGCCAAGCGCGTGCTGTTCAACCATTACCGCCGCCAGGACCTGGAGCGC
GCCTATCTCGACACCCTCGCGCAGATGCCGGAAATGGTCGCGCCTTCAGAAGAAGAGAAAGCGATCATCCTGCAAACCCT
GATGGAGCTGGATCAGTTGCTCGATGGTCTGCCGCGCGCCGTCAAACGCGCATTTCTGATGGCGCAGGTCGATGGCCTGA
CCTATCCGCAGATCGCCACCGAACTGGGCATTTCCGTCGCCACGGTCAAACGTCATCTGAATAAAGCGGCGATGCGCTGC
TACTTCGCCCTGTGA

Upstream 100 bases:

>100_bases
TATTCTCATACGCAAAAGAGTCTGATTGCCGGGCATCCCTGACAGCCCTACAATGCGAACCATTCTTGTTCTCTAACGCA
TCCCGCATGCGCCCGGAGTG

Downstream 100 bases:

>100_bases
ACCCGCCGATGGATTTTTCCGCGCAGGTCGCCGAACAGGCGGTGCACTGGTTGCTGGAAATGCAGCAGGGCCCCTTGAAC
CCGCGTCAGCAACAAGCCTG

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 164; Mature: 163

Protein sequence:

>164_residues
MPLSSAHPVESLYQAHHSWLTGWLRRRLGCPDSAADLAQDTFIRLLTAREPAVIIEPRAFLTTLAKRVLFNHYRRQDLER
AYLDTLAQMPEMVAPSEEEKAIILQTLMELDQLLDGLPRAVKRAFLMAQVDGLTYPQIATELGISVATVKRHLNKAAMRC
YFAL

Sequences:

>Translated_164_residues
MPLSSAHPVESLYQAHHSWLTGWLRRRLGCPDSAADLAQDTFIRLLTAREPAVIIEPRAFLTTLAKRVLFNHYRRQDLER
AYLDTLAQMPEMVAPSEEEKAIILQTLMELDQLLDGLPRAVKRAFLMAQVDGLTYPQIATELGISVATVKRHLNKAAMRC
YFAL
>Mature_163_residues
PLSSAHPVESLYQAHHSWLTGWLRRRLGCPDSAADLAQDTFIRLLTAREPAVIIEPRAFLTTLAKRVLFNHYRRQDLERA
YLDTLAQMPEMVAPSEEEKAIILQTLMELDQLLDGLPRAVKRAFLMAQVDGLTYPQIATELGISVATVKRHLNKAAMRCY
FAL

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates the fec genes for iron dicitrate transport (Probable) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790746, Length=151, Percent_Identity=49.6688741721854, Blast_Score=158, Evalue=2e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 18601; Mature: 18470

Theoretical pI: Translated: 8.24; Mature: 8.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLSSAHPVESLYQAHHSWLTGWLRRRLGCPDSAADLAQDTFIRLLTAREPAVIIEPRAF
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEECCHHH
LTTLAKRVLFNHYRRQDLERAYLDTLAQMPEMVAPSEEEKAIILQTLMELDQLLDGLPRA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
VKRAFLMAQVDGLTYPQIATELGISVATVKRHLNKAAMRCYFAL
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PLSSAHPVESLYQAHHSWLTGWLRRRLGCPDSAADLAQDTFIRLLTAREPAVIIEPRAF
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEECCHHH
LTTLAKRVLFNHYRRQDLERAYLDTLAQMPEMVAPSEEEKAIILQTLMELDQLLDGLPRA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
VKRAFLMAQVDGLTYPQIATELGISVATVKRHLNKAAMRCYFAL
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2254251; 7610040; 9278503; 8052622 [H]