Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
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Accession | NC_007492 |
Length | 6,438,405 |
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The map label for this gene is hutH [H]
Identifier: 77456594
GI number: 77456594
Start: 418016
End: 419548
Strand: Direct
Name: hutH [H]
Synonym: Pfl01_0366
Alternate gene names: 77456594
Gene position: 418016-419548 (Clockwise)
Preceding gene: 77456593
Following gene: 77456595
Centisome position: 6.49
GC content: 64.45
Gene sequence:
>1533_bases ATGACTGCGCTGAACCTGATCCCCGGCCAACTGAGCCTGGCCCAACTGCGTGACGTTTATCAGAACCCGGTCAAGCTGAC CCTCGACAACAGCGCCAGCGCGCAGATCGAAGCCAGCGTGGCCTGCGTCGAGCAGATCCTCGCGGAAAACCGCACCGCCT ACGGCATCAACACCGGTTTCGGCCTGCTGGCCTCGACCCGCATCGCCAGCGAAGACCTGGAAAACCTCCAGCGCTCGCTG GTGCTGTCCCACGCCGCCGGCGTCGGCCAGCCGATCAGCGATGAGCTGGTGCGCCTGATCATGGTGCTCAAGGTCAACAG CCTCAGCCGTGGTTTCTCCGGCATCCGTCGGGTGGTGATCGATGCGCTGATCGCCCTGATCAACGCCGAGGTATATCCGC ACATTCCGTTGAAAGGCTCGGTCGGTGCCTCCGGTGACCTGGCGCCATTGGCGCACATGTCGCTGGTGCTGCTGGGCGAG GGCAAGGCGCGCCACAAGGGCGAGTGGATGGATGCGACCGAAGCGCTGAAAGTCGCCGGTCTGACGCCGCTGACGCTGGC GGCGAAAGAAGGTCTGGCGCTGCTCAACGGTACTCAGGTTTCCACTGCATTCGCGTTGCGTGGTCTGTTCGAAGGTGAAG ACCTGTTCGCCGGCGCGCTGGCGCTGGGCGGTCTGACGGTGGAAGCGGTGCTGGGCTCGCGTTCGCCGTTCGATGCGCGC ATCCACGCCGCCCGTGGCCAGAAAGGCCAGATCGACGCCGCTGCCGCTTACCGCGATCTGCTGGGCGAGCGCAGCGAAGT CTCCGACTCGCACCAGAACTGCGAGAAGGTTCAGGACCCGTATTCGCTGCGTTGCCAGCCGCAAGTCATGGGTGCGTGTC TGACTCAGTTCCGCCAGGCCGCCGAAGTGCTGGCCATCGAAGCCAACGCCGTATCCGACAACCCGCTGGTGTTCGCGGCC GAAGGCGACGTGATTTCCGGCGGCAACTTCCACGCCGAACCAGTGGCCATGGCCGCTGACAACATGGCGCTGGCCATTGC CGAAATCGGTTCCCTGAGTGAGCGCCGTATCTCGCTGATGATGGACAAGCACATGTCGCAACTGCCGCCGTTCCTGGTGG CCAACGGTGGCGTGAACTCCGGTTTCATGATCGCCCAAGTGACCGCTGCGGCCCTGGCCAGCGAAAACAAGGCGCTGTCC CATCCGCATTCGGTGGACAGCCTGCCGACTTCTGCCAACCAGGAAGACCACGTCTCCATGGCCCCGGCTGCCGGCAAGCG CCTGTGGGAAATGGCCGAGAACACCCGCGGGATCCTCGCGGTGGAATGGTTGGCGGCGGTGCAGGGCCTGGACCTGCGCA ACGGCCTGAAGACCTCGGCCAAACTGGAACAGGCCCGTGGGATTCTGCGTCGCGAAGTGCCGTTCTACGAGAAGGACCGC TTCTTCGCGCCGGATATCAACGCGGCGACCGAGCTGCTGGCTTCGCGCATCTTGACTGAACTGGTCCCGGCGAAACTGCT GCCGAGCCTGTAA
Upstream 100 bases:
>100_bases GTGCCAAGGCGCGGATCGTCCAAAAGACGAGAGGCGACGGATAACGGAATGCTCCGGAGCGACTGGTAGTTAATAACAAT GCCTCAAAAGGAGCATTTAA
Downstream 100 bases:
>100_bases GAGCCACCCCTCACCCCAACCCTCCCGAAACGTCGGACCGCCCCAAGGGGGAGAGGGGGAAAGGGAGCCGATCTTCATGA TTTTCCAGACTTGAGTTCGA
Product: histidine ammonia-lyase
Products: NA
Alternate protein names: Histidase [H]
Number of amino acids: Translated: 510; Mature: 509
Protein sequence:
>510_residues MTALNLIPGQLSLAQLRDVYQNPVKLTLDNSASAQIEASVACVEQILAENRTAYGINTGFGLLASTRIASEDLENLQRSL VLSHAAGVGQPISDELVRLIMVLKVNSLSRGFSGIRRVVIDALIALINAEVYPHIPLKGSVGASGDLAPLAHMSLVLLGE GKARHKGEWMDATEALKVAGLTPLTLAAKEGLALLNGTQVSTAFALRGLFEGEDLFAGALALGGLTVEAVLGSRSPFDAR IHAARGQKGQIDAAAAYRDLLGERSEVSDSHQNCEKVQDPYSLRCQPQVMGACLTQFRQAAEVLAIEANAVSDNPLVFAA EGDVISGGNFHAEPVAMAADNMALAIAEIGSLSERRISLMMDKHMSQLPPFLVANGGVNSGFMIAQVTAAALASENKALS HPHSVDSLPTSANQEDHVSMAPAAGKRLWEMAENTRGILAVEWLAAVQGLDLRNGLKTSAKLEQARGILRREVPFYEKDR FFAPDINAATELLASRILTELVPAKLLPSL
Sequences:
>Translated_510_residues MTALNLIPGQLSLAQLRDVYQNPVKLTLDNSASAQIEASVACVEQILAENRTAYGINTGFGLLASTRIASEDLENLQRSL VLSHAAGVGQPISDELVRLIMVLKVNSLSRGFSGIRRVVIDALIALINAEVYPHIPLKGSVGASGDLAPLAHMSLVLLGE GKARHKGEWMDATEALKVAGLTPLTLAAKEGLALLNGTQVSTAFALRGLFEGEDLFAGALALGGLTVEAVLGSRSPFDAR IHAARGQKGQIDAAAAYRDLLGERSEVSDSHQNCEKVQDPYSLRCQPQVMGACLTQFRQAAEVLAIEANAVSDNPLVFAA EGDVISGGNFHAEPVAMAADNMALAIAEIGSLSERRISLMMDKHMSQLPPFLVANGGVNSGFMIAQVTAAALASENKALS HPHSVDSLPTSANQEDHVSMAPAAGKRLWEMAENTRGILAVEWLAAVQGLDLRNGLKTSAKLEQARGILRREVPFYEKDR FFAPDINAATELLASRILTELVPAKLLPSL >Mature_509_residues TALNLIPGQLSLAQLRDVYQNPVKLTLDNSASAQIEASVACVEQILAENRTAYGINTGFGLLASTRIASEDLENLQRSLV LSHAAGVGQPISDELVRLIMVLKVNSLSRGFSGIRRVVIDALIALINAEVYPHIPLKGSVGASGDLAPLAHMSLVLLGEG KARHKGEWMDATEALKVAGLTPLTLAAKEGLALLNGTQVSTAFALRGLFEGEDLFAGALALGGLTVEAVLGSRSPFDARI HAARGQKGQIDAAAAYRDLLGERSEVSDSHQNCEKVQDPYSLRCQPQVMGACLTQFRQAAEVLAIEANAVSDNPLVFAAE GDVISGGNFHAEPVAMAADNMALAIAEIGSLSERRISLMMDKHMSQLPPFLVANGGVNSGFMIAQVTAAALASENKALSH PHSVDSLPTSANQEDHVSMAPAAGKRLWEMAENTRGILAVEWLAAVQGLDLRNGLKTSAKLEQARGILRREVPFYEKDRF FAPDINAATELLASRILTELVPAKLLPSL
Specific function: Unknown
COG id: COG2986
COG function: function code E; Histidine ammonia-lyase
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PAL/histidase family [H]
Homologues:
Organism=Homo sapiens, GI4504333, Length=496, Percent_Identity=43.75, Blast_Score=410, Evalue=1e-114, Organism=Caenorhabditis elegans, GI17567831, Length=483, Percent_Identity=41.2008281573499, Blast_Score=352, Evalue=2e-97,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005921 - InterPro: IPR008948 - InterPro: IPR001106 - InterPro: IPR022313 [H]
Pfam domain/function: PF00221 PAL [H]
EC number: =4.3.1.3 [H]
Molecular weight: Translated: 54109; Mature: 53977
Theoretical pI: Translated: 5.47; Mature: 5.47
Prosite motif: PS00488 PAL_HISTIDASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTALNLIPGQLSLAQLRDVYQNPVKLTLDNSASAQIEASVACVEQILAENRTAYGINTGF CCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEECCCCH GLLASTRIASEDLENLQRSLVLSHAAGVGQPISDELVRLIMVLKVNSLSRGFSGIRRVVI HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DALIALINAEVYPHIPLKGSVGASGDLAPLAHMSLVLLGEGKARHKGEWMDATEALKVAG HHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHEEEEEEECCCCCCCCCCCCHHHHHHHCC LTPLTLAAKEGLALLNGTQVSTAFALRGLFEGEDLFAGALALGGLTVEAVLGSRSPFDAR CCCHHHHHHCCCEEECCCHHHHHHHHHHHCCCCHHHHHHHHHCCEEEEHHHCCCCCCCHH IHAARGQKGQIDAAAAYRDLLGERSEVSDSHQNCEKVQDPYSLRCQPQVMGACLTQFRQA EEECCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH AEVLAIEANAVSDNPLVFAAEGDVISGGNFHAEPVAMAADNMALAIAEIGSLSERRISLM HHHEEEEECCCCCCCEEEEECCCEECCCCCCCCCHHEECCCCEEEHHHHCCCHHHHHHHH MDKHMSQLPPFLVANGGVNSGFMIAQVTAAALASENKALSHPHSVDSLPTSANQEDHVSM HHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEE APAAGKRLWEMAENTRGILAVEWLAAVQGLDLRNGLKTSAKLEQARGILRREVPFYEKDR CCHHHHHHHHHHHCCCCEEHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHCCCCCCCCC FFAPDINAATELLASRILTELVPAKLLPSL CCCCCCHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure TALNLIPGQLSLAQLRDVYQNPVKLTLDNSASAQIEASVACVEQILAENRTAYGINTGF CCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEECCCCH GLLASTRIASEDLENLQRSLVLSHAAGVGQPISDELVRLIMVLKVNSLSRGFSGIRRVVI HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DALIALINAEVYPHIPLKGSVGASGDLAPLAHMSLVLLGEGKARHKGEWMDATEALKVAG HHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHEEEEEEECCCCCCCCCCCCHHHHHHHCC LTPLTLAAKEGLALLNGTQVSTAFALRGLFEGEDLFAGALALGGLTVEAVLGSRSPFDAR CCCHHHHHHCCCEEECCCHHHHHHHHHHHCCCCHHHHHHHHHCCEEEEHHHCCCCCCCHH IHAARGQKGQIDAAAAYRDLLGERSEVSDSHQNCEKVQDPYSLRCQPQVMGACLTQFRQA EEECCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH AEVLAIEANAVSDNPLVFAAEGDVISGGNFHAEPVAMAADNMALAIAEIGSLSERRISLM HHHEEEEECCCCCCCEEEEECCCEECCCCCCCCCHHEECCCCEEEHHHHCCCHHHHHHHH MDKHMSQLPPFLVANGGVNSGFMIAQVTAAALASENKALSHPHSVDSLPTSANQEDHVSM HHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEE APAAGKRLWEMAENTRGILAVEWLAAVQGLDLRNGLKTSAKLEQARGILRREVPFYEKDR CCHHHHHHHHHHHCCCCEEHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHCCCCCCCCC FFAPDINAATELLASRILTELVPAKLLPSL CCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA