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The map label for this gene is ykgD [C]

Identifier: 73539154

GI number: 73539154

Start: 2098678

End: 2099583

Strand: Reverse

Name: ykgD [C]

Synonym: Reut_B5332

Alternate gene names: 73539154

Gene position: 2099583-2098678 (Counterclockwise)

Preceding gene: 73539155

Following gene: 73539153

Centisome position: 77.02

GC content: 67.77

Gene sequence:

>906_bases
ATGGCCGCTCCTGACACCAGCCTCCACACCGGGAATGACCCGCTGCGACACCATGCGGTGTTCAACGCGCTGACGGGCTC
CCGTGCCTCGCTGGAACGCGCCGCCGCGCTTGGCGATGGGCTTGGCCTCGCGCTGTGGCGCAACGGGCATGACGACACCG
CCTACGCGCAACCGGGCCACCATACGCTGTCGGTTTACCTCGAGGGCGGCCATTCGACGTACCGGCTCGATCAGCCCGGC
AATCTCGGCGCTCCCGGCCGCCTGTGCCTGTTGCCCGCGGATCATGAGTCGCGCTGGCATGTCGGGGGTACCCAGCGCTT
CCTGCATCTGTACTTCGATCCCGGCTACGTCGCCTGGCATTGCGTGCGGCTGCTCGATCGCGAGCCGCGCGGGCTGCAAT
TGCGCGACCTGACCTTCGCCGAGGATCCGCACCTGTTCGCGTTCGGCCAGCGCCTGGCCATGCTCGACTGGCAGGCGCCC
GATGCGCGCATGGCCGGCAACGCGCTTGCGCATGATGCCGTCACGCATCTTCTGCTCAGCCATGCCGCCCATCGCGCAGG
CACCGACTGGCGAGGCGGATTGTCTGCAGCGGCGCGCCGCATGGTGCGCGACTGGATCGAAGCCCATCCCGAACAGAATC
CGACGCTCGGTGAACTGGCAGCGCTGGCGGGTTTGTCGGAATACCACTTTGCGCGCATGTTCCGCGTGAGCTTCGGCATG
CCGCCGCATGCTTGGATTTTGCGAGCGCGGCTGCAACGCGCGCTGCGACTGCTGGGCGAGCCGGGCCTGTGCTTGCGTGA
GATCGCTATGCGCGCCGGGTTTGCCTCGCCCAGCCACTTCAATAACCGCTTCCGTTCAGCGTTCGGCATCACGCCTGGCG
CGTGGCGTGCCGACCGCGTACGCTGA

Upstream 100 bases:

>100_bases
GAGGCCCAGAGCGTACCCGTTTCTGCGTGCATGTGTGGTGTCTTCCGGCAACGTCGGGCGGGCGATCGCGGTATAGTCGC
CAGGCACTCTTCAGACACGT

Downstream 100 bases:

>100_bases
CGCGGCTTGCCGTCCGGCCGTCGATGCCGGAAACCAATTCCCTTTCCGGCTGTCCTCTGAAAAACAGCGTAATCCCGCCT
AATGGCGCCATTTGTCGGTG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Transcriptional Regulator; Transcription Regulator AraC Family; Helix-Turn-Helix Domain-Containing Protein; Helix-Turn-Helix Protein; Transcriptional Regulator AraC; Transcriptional Regulator AraC-Type; HTH-Type Transcriptional Regulator; AraC Family Regulatory Protein; AraC-Family Transcriptional Regulator; AraC Family Transcription Regulator; HTH-Type Transcriptional Regulator ChbR; Transcriptional Regulator Protein AraC Family; AraC-Type Trancriptional Regulator; AraC Family Regulatory Helix-Turn-Helix

Number of amino acids: Translated: 301; Mature: 300

Protein sequence:

>301_residues
MAAPDTSLHTGNDPLRHHAVFNALTGSRASLERAAALGDGLGLALWRNGHDDTAYAQPGHHTLSVYLEGGHSTYRLDQPG
NLGAPGRLCLLPADHESRWHVGGTQRFLHLYFDPGYVAWHCVRLLDREPRGLQLRDLTFAEDPHLFAFGQRLAMLDWQAP
DARMAGNALAHDAVTHLLLSHAAHRAGTDWRGGLSAAARRMVRDWIEAHPEQNPTLGELAALAGLSEYHFARMFRVSFGM
PPHAWILRARLQRALRLLGEPGLCLREIAMRAGFASPSHFNNRFRSAFGITPGAWRADRVR

Sequences:

>Translated_301_residues
MAAPDTSLHTGNDPLRHHAVFNALTGSRASLERAAALGDGLGLALWRNGHDDTAYAQPGHHTLSVYLEGGHSTYRLDQPG
NLGAPGRLCLLPADHESRWHVGGTQRFLHLYFDPGYVAWHCVRLLDREPRGLQLRDLTFAEDPHLFAFGQRLAMLDWQAP
DARMAGNALAHDAVTHLLLSHAAHRAGTDWRGGLSAAARRMVRDWIEAHPEQNPTLGELAALAGLSEYHFARMFRVSFGM
PPHAWILRARLQRALRLLGEPGLCLREIAMRAGFASPSHFNNRFRSAFGITPGAWRADRVR
>Mature_300_residues
AAPDTSLHTGNDPLRHHAVFNALTGSRASLERAAALGDGLGLALWRNGHDDTAYAQPGHHTLSVYLEGGHSTYRLDQPGN
LGAPGRLCLLPADHESRWHVGGTQRFLHLYFDPGYVAWHCVRLLDREPRGLQLRDLTFAEDPHLFAFGQRLAMLDWQAPD
ARMAGNALAHDAVTHLLLSHAAHRAGTDWRGGLSAAARRMVRDWIEAHPEQNPTLGELAALAGLSEYHFARMFRVSFGMP
PHAWILRARLQRALRLLGEPGLCLREIAMRAGFASPSHFNNRFRSAFGITPGAWRADRVR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33375; Mature: 33244

Theoretical pI: Translated: 9.22; Mature: 9.22

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAPDTSLHTGNDPLRHHAVFNALTGSRASLERAAALGDGLGLALWRNGHDDTAYAQPGH
CCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCC
HTLSVYLEGGHSTYRLDQPGNLGAPGRLCLLPADHESRWHVGGTQRFLHLYFDPGYVAWH
EEEEEEEECCCCEEEECCCCCCCCCCEEEEEECCCCCCEECCCCEEEEEEEECCCHHHHH
CVRLLDREPRGLQLRDLTFAEDPHLFAFGQRLAMLDWQAPDARMAGNALAHDAVTHLLLS
HHHHHCCCCCCCEEEECEECCCCCHHHHHCHHHEEECCCCCHHHHCCHHHHHHHHHHHHH
HAAHRAGTDWRGGLSAAARRMVRDWIEAHPEQNPTLGELAALAGLSEYHFARMFRVSFGM
HHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCC
PPHAWILRARLQRALRLLGEPGLCLREIAMRAGFASPSHFNNRFRSAFGITPGAWRADRV
CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCC
R
C
>Mature Secondary Structure 
AAPDTSLHTGNDPLRHHAVFNALTGSRASLERAAALGDGLGLALWRNGHDDTAYAQPGH
CCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCC
HTLSVYLEGGHSTYRLDQPGNLGAPGRLCLLPADHESRWHVGGTQRFLHLYFDPGYVAWH
EEEEEEEECCCCEEEECCCCCCCCCCEEEEEECCCCCCEECCCCEEEEEEEECCCHHHHH
CVRLLDREPRGLQLRDLTFAEDPHLFAFGQRLAMLDWQAPDARMAGNALAHDAVTHLLLS
HHHHHCCCCCCCEEEECEECCCCCHHHHHCHHHEEECCCCCHHHHCCHHHHHHHHHHHHH
HAAHRAGTDWRGGLSAAARRMVRDWIEAHPEQNPTLGELAALAGLSEYHFARMFRVSFGM
HHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCC
PPHAWILRARLQRALRLLGEPGLCLREIAMRAGFASPSHFNNRFRSAFGITPGAWRADRV
CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCC
R
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA