Click here to switch to the map view.

The map label for this gene is ybdA [C]

Identifier: 73539155

GI number: 73539155

Start: 2099697

End: 2100944

Strand: Reverse

Name: ybdA [C]

Synonym: Reut_B5333

Alternate gene names: 73539155

Gene position: 2100944-2099697 (Counterclockwise)

Preceding gene: 73539156

Following gene: 73539154

Centisome position: 77.07

GC content: 68.11

Gene sequence:

>1248_bases
ATGTCTTCCCCCGCCGCCACCACTGCCGAAGCGTCCGACGGCGTCTTCGGTGATGCTTCATTCCGCCGTTTCTGGTTTGC
GCGCCTGTGCACGACCATCGGGTACCAGATCTTCACCGTGGCGGTTGGCTGGCAGATGTATGACCTGACGCGTGATGCGT
TCATGCTCGGGCTGGTGGGGCTCGTGCAGTTCCTGCCGTCGGTCGCGCTGATCCTGATGTCGGGCCATATGGCGGACCGC
TTTGACCGTCGCCGCATCGTACGGACCTGCCAGGCGCTGGAAGCGCTGATCGCTGTCGCGATGGCAGTGTCCAGCCTCTC
CGGGCGGATCAATCCCGAGCACATCTTCGTGTTCGTGGCGCTGATCGGTGCGACGCGGGCGTTCGAAACGCCCACACTGC
AGGCTTTGCTGCCGAGCGTGGTAACGCAGCGCCAGTTGCCGCGCGCGGTGGCGCTGTCCAGTTCCGCGGGGCAGGCGGCC
ATCATCATCGGCCCGGCCATCGGCGGCTTCGCTTATGTTGCGGGGCCAGGCGTGGTGTACGCGCTGAGCGCCACGCTGTT
CGTGATCGCCGCGATCCTCGTCAGCGGCCTGACGCTGCGCCAGCCGGTGCAGCGGCTAACGGCGCCGGTCAGCGTGAAGA
CGCTGTTTGCCGGGTTTGCCTATATCCGCAGCCGCCCGGTGCTGCTTGGCGCGATCTCGCTGGACCTGTTCGCGGTCCTG
CTCGGTGGCGCGACGGCGCTGCTGCCGATCTATGCGCGCGACATTCTCCACACCGGCCCGTGGGGGCTTGGGCTGCTGCG
CTCGGCGCCCGCGATCGGGGCGCTGGTCACCGCGCTGTGGCTGGCCCACCATCCGCTCAACCGCCGTGCGGGCAAGGTGA
TGTTCGGTGCCGTGGCACTGTTCGGCGCGGCCACGCTGGTGTTCGGCGTATCGCACTGGCTGCCCCTGTCGATGGCCGCG
CTGGTGGTGCTTGGCGCATCGGACATGATCAGCGTGGTGGTGCGCTCGACGTTGGTTCAGCTCGATACGCCCGATGACAT
GCGCGGACGCGTCGGCGCCGTCAACTCGGTCTTTATCGGTGCATCCAACCAGCTCGGCGAGTTCGAGTCGGGTGTGACGG
CGGCACTGCTGGGGCCGGTCGGCGCGGTGATCCTCGGCGGCGTGGGCACGCTGCTGGTGGTGGCGGTCTGGATGCGCCTG
TTCCCGGCGCTGACCCACCGCGACCGCCTGCACGACCATCCGGCCTGA

Upstream 100 bases:

>100_bases
CCGCTCCGCAGCTGGCCGCTCCGCAGCTGGCCGCTCCGCAGCTAGCCGCAAGCCACGCCATCCATCTCCCTGACCGGCAC
CCGCCGCCGCGACTGCTCCC

Downstream 100 bases:

>100_bases
TGACTGGGGCCCCGAGGCCCAGAGCGTACCCGTTTCTGCGTGCATGTGTGGTGTCTTCCGGCAACGTCGGGCGGGCGATC
GCGGTATAGTCGCCAGGCAC

Product: hypothetical protein

Products: NA

Alternate protein names: Facilitator Superfamily Protein; Facilitator Superfamily Permease; Facilitator Superfamily Transporter; MFS Permease; DrugProton Antiporter; Membrane Transporter; Transporter Facilitator Family; Transmembrane Protein; Permease Of Facilitator Superfamily; Facilitator Superfamily Transporter Permease; MFS Family Transporter; Facilitator Superfamily; Facilitator MFS1 Protein; Permease Facilitator Superfamily; Macrolide-Efflux Protein; Integral Membrane Protein; Permease Protein; Permeases Of Facilitator Superfamily; Permease MDR ; Facilitator Superfamily Transmembrane Transporter; Arabinose Efflux Permease; Permease Of Facilitator Superfamily Protein; Multidrug ABC Transporter; Integral Membrane Efflux Protein; Drug Proton Antiporter; Integral Membrane Protein MFS Transporter; Siderophore Export Protein; Membrame Protein; DrugH+ Antiporter; Facilitator Family Transporter; Facilitator Superfamily Multidrug Resistance Protein; Drug Resistance Efflux Protein; Facilitator Superfamily Transporter Transporter; Permeases Of Facilitator Superfamily Protein

Number of amino acids: Translated: 415; Mature: 414

Protein sequence:

>415_residues
MSSPAATTAEASDGVFGDASFRRFWFARLCTTIGYQIFTVAVGWQMYDLTRDAFMLGLVGLVQFLPSVALILMSGHMADR
FDRRRIVRTCQALEALIAVAMAVSSLSGRINPEHIFVFVALIGATRAFETPTLQALLPSVVTQRQLPRAVALSSSAGQAA
IIIGPAIGGFAYVAGPGVVYALSATLFVIAAILVSGLTLRQPVQRLTAPVSVKTLFAGFAYIRSRPVLLGAISLDLFAVL
LGGATALLPIYARDILHTGPWGLGLLRSAPAIGALVTALWLAHHPLNRRAGKVMFGAVALFGAATLVFGVSHWLPLSMAA
LVVLGASDMISVVVRSTLVQLDTPDDMRGRVGAVNSVFIGASNQLGEFESGVTAALLGPVGAVILGGVGTLLVVAVWMRL
FPALTHRDRLHDHPA

Sequences:

>Translated_415_residues
MSSPAATTAEASDGVFGDASFRRFWFARLCTTIGYQIFTVAVGWQMYDLTRDAFMLGLVGLVQFLPSVALILMSGHMADR
FDRRRIVRTCQALEALIAVAMAVSSLSGRINPEHIFVFVALIGATRAFETPTLQALLPSVVTQRQLPRAVALSSSAGQAA
IIIGPAIGGFAYVAGPGVVYALSATLFVIAAILVSGLTLRQPVQRLTAPVSVKTLFAGFAYIRSRPVLLGAISLDLFAVL
LGGATALLPIYARDILHTGPWGLGLLRSAPAIGALVTALWLAHHPLNRRAGKVMFGAVALFGAATLVFGVSHWLPLSMAA
LVVLGASDMISVVVRSTLVQLDTPDDMRGRVGAVNSVFIGASNQLGEFESGVTAALLGPVGAVILGGVGTLLVVAVWMRL
FPALTHRDRLHDHPA
>Mature_414_residues
SSPAATTAEASDGVFGDASFRRFWFARLCTTIGYQIFTVAVGWQMYDLTRDAFMLGLVGLVQFLPSVALILMSGHMADRF
DRRRIVRTCQALEALIAVAMAVSSLSGRINPEHIFVFVALIGATRAFETPTLQALLPSVVTQRQLPRAVALSSSAGQAAI
IIGPAIGGFAYVAGPGVVYALSATLFVIAAILVSGLTLRQPVQRLTAPVSVKTLFAGFAYIRSRPVLLGAISLDLFAVLL
GGATALLPIYARDILHTGPWGLGLLRSAPAIGALVTALWLAHHPLNRRAGKVMFGAVALFGAATLVFGVSHWLPLSMAAL
VVLGASDMISVVVRSTLVQLDTPDDMRGRVGAVNSVFIGASNQLGEFESGVTAALLGPVGAVILGGVGTLLVVAVWMRLF
PALTHRDRLHDHPA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43700; Mature: 43569

Theoretical pI: Translated: 10.68; Mature: 10.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSPAATTAEASDGVFGDASFRRFWFARLCTTIGYQIFTVAVGWQMYDLTRDAFMLGLVG
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
LVQFLPSVALILMSGHMADRFDRRRIVRTCQALEALIAVAMAVSSLSGRINPEHIFVFVA
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
LIGATRAFETPTLQALLPSVVTQRQLPRAVALSSSAGQAAIIIGPAIGGFAYVAGPGVVY
HHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEEEECCCCCHHHHCCCCHHH
ALSATLFVIAAILVSGLTLRQPVQRLTAPVSVKTLFAGFAYIRSRPVLLGAISLDLFAVL
HHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHH
LGGATALLPIYARDILHTGPWGLGLLRSAPAIGALVTALWLAHHPLNRRAGKVMFGAVAL
HCCHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
FGAATLVFGVSHWLPLSMAALVVLGASDMISVVVRSTLVQLDTPDDMRGRVGAVNSVFIG
HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEE
ASNQLGEFESGVTAALLGPVGAVILGGVGTLLVVAVWMRLFPALTHRDRLHDHPA
CCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SSPAATTAEASDGVFGDASFRRFWFARLCTTIGYQIFTVAVGWQMYDLTRDAFMLGLVG
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
LVQFLPSVALILMSGHMADRFDRRRIVRTCQALEALIAVAMAVSSLSGRINPEHIFVFVA
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
LIGATRAFETPTLQALLPSVVTQRQLPRAVALSSSAGQAAIIIGPAIGGFAYVAGPGVVY
HHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEEEECCCCCHHHHCCCCHHH
ALSATLFVIAAILVSGLTLRQPVQRLTAPVSVKTLFAGFAYIRSRPVLLGAISLDLFAVL
HHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHH
LGGATALLPIYARDILHTGPWGLGLLRSAPAIGALVTALWLAHHPLNRRAGKVMFGAVAL
HCCHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
FGAATLVFGVSHWLPLSMAALVVLGASDMISVVVRSTLVQLDTPDDMRGRVGAVNSVFIG
HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEE
ASNQLGEFESGVTAALLGPVGAVILGGVGTLLVVAVWMRLFPALTHRDRLHDHPA
CCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA