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The map label for this gene is ydiJ [C]

Identifier: 73538244

GI number: 73538244

Start: 1072978

End: 1074348

Strand: Reverse

Name: ydiJ [C]

Synonym: Reut_B4415

Alternate gene names: 73538244

Gene position: 1074348-1072978 (Counterclockwise)

Preceding gene: 73538246

Following gene: 73538241

Centisome position: 39.41

GC content: 62.87

Gene sequence:

>1371_bases
ATGGACGAGTTTGCGATTCAGGGATTCCGCGGCAGGCTGATCGGCCCGTCCGACAAGGACTACGACGACGCGCGAGCGCT
GTACAACGGCATGATCGACAAGCGGCCCAAGCTGATCGCCCGCTGCACGGACGCCGCCGACATCATCGCTGCGGTCAACT
ACGCGCGTGAGAACAAACTGCTTCTCGCAGTCCGCGGAGGCGGACACAACGGGCCCGGTCTGGGCAGTTGCGACGGTGGG
CTGGTCATCGACCTGTCACAGATGCGCAGCGTGCGCGTCGACCCGGCGAGCGGCACGGTGCGTGTCGAGCCGGGCTGCAC
AGCGGCGGATCTCGATCACGCGACCCACGCCTTTGGCCTTGCCGTACCGCTGGGCATCGTTGGCAGCACGGGCGTGGCAG
GCCTGACGTTAGGCGGTGGCACCGGCTATCTCACGCGCAAGTACGGCCTCACGGTCGATAACCTGCTGGAGGTGGATGTC
GTGCTCGCCGACGGCTCGTTCGTCACCGCCAACAAGGACGAGCACGTCGACCTCTTCTGGGCAGTGCGAGGGGGCGGAGG
CAACTTCGGCGTGGTGACGAGCTTTCTGTTTCAGGCCCACCCGGCAAAAATGGTGTTCGCCGGTCCCATCTTCTGGGACG
CCAGGGATGCCAGGCAGGTCATGTCGACGTACCGCGACTTTATTCCCAATGCGCCCGAGGAACTCGGGCTGTTTGTCGGG
CTGAAGACCGTGCCTCCCACCGATCCATTCCCTCAGGAGCACTGGAACAAACGTGCGTGTGCCCTGATCGGTGCTTTCAA
CGGACCGATCGATGCGGGCAAGCAACTGGTGGATTCGCTTCTGGAGAAACTGCCGGCCCCGTTGTTCAACTGGATGGGCG
AGATGCCGTGGACTGCCATCAACAGTCTGTTCGACCCGTTCTTCCCCAAGGGCTTGCAATGGTACTGGAAGGGCGACTTC
GTCAAGGCGTTGCCAGATGAGGCGATCGATGTGCACATCGCCAATGCGATCGAAGCACCCACCCCGTTCTGCCTGATGCA
CCTTTACCCCATAGACGGCGCCGTTCGGCGGATCGGCAGGGACGCCACGCCATGGAGCGCGCGAGACGCTTCGTTTTCCA
TGGTCATCGCGGGGATCAGCCCGGATCCCAAGGACGCAGAGGCGCTCAAGACCTGGGGGCGCGCCTACTGGAGCGCTATC
CACCCGTTCAATCTGCAAGGGGCCTACGTCAACTTCCTGGATGCCGACGAGGCCGAGAACCGGGTCGAACTGAGCTACGG
CGAGAACTACACACGCCTCGCTGCGATCAAGGCGAAGTACGATCCCGACAACTTGTTCCGGGTCAACCAGAACATCAAGC
CGAAAGCGTGA

Upstream 100 bases:

>100_bases
TTGATCACACGTCGTTGTCAGCGATACCGCACCGAGGCTGCATGGTGGGACAGCCGTTGCGCGGGGCGCGCGATGGGTCA
CTCTTCAAGGAGGGAGCGCC

Downstream 100 bases:

>100_bases
ATCGACACGGCGCGGGCTTGCGTGCCCGCGCCGTCTAGTGGACTCGGTCTTGCGTGCGTTCAGGGCTTCGACGGTTGCCC
CAGCTTCGGCGGCGCCGGCG

Product: FAD linked oxidase

Products: NA

Alternate protein names: 6-HDNO [H]

Number of amino acids: Translated: 456; Mature: 456

Protein sequence:

>456_residues
MDEFAIQGFRGRLIGPSDKDYDDARALYNGMIDKRPKLIARCTDAADIIAAVNYARENKLLLAVRGGGHNGPGLGSCDGG
LVIDLSQMRSVRVDPASGTVRVEPGCTAADLDHATHAFGLAVPLGIVGSTGVAGLTLGGGTGYLTRKYGLTVDNLLEVDV
VLADGSFVTANKDEHVDLFWAVRGGGGNFGVVTSFLFQAHPAKMVFAGPIFWDARDARQVMSTYRDFIPNAPEELGLFVG
LKTVPPTDPFPQEHWNKRACALIGAFNGPIDAGKQLVDSLLEKLPAPLFNWMGEMPWTAINSLFDPFFPKGLQWYWKGDF
VKALPDEAIDVHIANAIEAPTPFCLMHLYPIDGAVRRIGRDATPWSARDASFSMVIAGISPDPKDAEALKTWGRAYWSAI
HPFNLQGAYVNFLDADEAENRVELSYGENYTRLAAIKAKYDPDNLFRVNQNIKPKA

Sequences:

>Translated_456_residues
MDEFAIQGFRGRLIGPSDKDYDDARALYNGMIDKRPKLIARCTDAADIIAAVNYARENKLLLAVRGGGHNGPGLGSCDGG
LVIDLSQMRSVRVDPASGTVRVEPGCTAADLDHATHAFGLAVPLGIVGSTGVAGLTLGGGTGYLTRKYGLTVDNLLEVDV
VLADGSFVTANKDEHVDLFWAVRGGGGNFGVVTSFLFQAHPAKMVFAGPIFWDARDARQVMSTYRDFIPNAPEELGLFVG
LKTVPPTDPFPQEHWNKRACALIGAFNGPIDAGKQLVDSLLEKLPAPLFNWMGEMPWTAINSLFDPFFPKGLQWYWKGDF
VKALPDEAIDVHIANAIEAPTPFCLMHLYPIDGAVRRIGRDATPWSARDASFSMVIAGISPDPKDAEALKTWGRAYWSAI
HPFNLQGAYVNFLDADEAENRVELSYGENYTRLAAIKAKYDPDNLFRVNQNIKPKA
>Mature_456_residues
MDEFAIQGFRGRLIGPSDKDYDDARALYNGMIDKRPKLIARCTDAADIIAAVNYARENKLLLAVRGGGHNGPGLGSCDGG
LVIDLSQMRSVRVDPASGTVRVEPGCTAADLDHATHAFGLAVPLGIVGSTGVAGLTLGGGTGYLTRKYGLTVDNLLEVDV
VLADGSFVTANKDEHVDLFWAVRGGGGNFGVVTSFLFQAHPAKMVFAGPIFWDARDARQVMSTYRDFIPNAPEELGLFVG
LKTVPPTDPFPQEHWNKRACALIGAFNGPIDAGKQLVDSLLEKLPAPLFNWMGEMPWTAINSLFDPFFPKGLQWYWKGDF
VKALPDEAIDVHIANAIEAPTPFCLMHLYPIDGAVRRIGRDATPWSARDASFSMVIAGISPDPKDAEALKTWGRAYWSAI
HPFNLQGAYVNFLDADEAENRVELSYGENYTRLAAIKAKYDPDNLFRVNQNIKPKA

Specific function: Unknown

COG id: COG0277

COG function: function code C; FAD/FMN-containing dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FAD-binding PCMH-type domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012951
- InterPro:   IPR016166
- InterPro:   IPR016167
- InterPro:   IPR016168
- InterPro:   IPR006094
- InterPro:   IPR006093 [H]

Pfam domain/function: PF08031 BBE; PF01565 FAD_binding_4 [H]

EC number: =1.5.3.6 [H]

Molecular weight: Translated: 49630; Mature: 49630

Theoretical pI: Translated: 5.45; Mature: 5.45

Prosite motif: PS00862 OX2_COVAL_FAD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDEFAIQGFRGRLIGPSDKDYDDARALYNGMIDKRPKLIARCTDAADIIAAVNYARENKL
CCCCCCCCCCCCEECCCCCCHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHCCCCCE
LLAVRGGGHNGPGLGSCDGGLVIDLSQMRSVRVDPASGTVRVEPGCTAADLDHATHAFGL
EEEEECCCCCCCCCCCCCCCEEEEHHHHCEEEECCCCCEEEECCCCCHHHCCHHHHHHHH
AVPLGIVGSTGVAGLTLGGGTGYLTRKYGLTVDNLLEVDVVLADGSFVTANKDEHVDLFW
HHHHHHCCCCCCCEEEECCCCCEEEEECCCCHHHEEEEEEEEECCCEEECCCCCCEEEEE
AVRGGGGNFGVVTSFLFQAHPAKMVFAGPIFWDARDARQVMSTYRDFIPNAPEELGLFVG
EEECCCCCHHHHHHHHHHCCCCCEEEECCEEECCHHHHHHHHHHHHHCCCCHHHCEEEEE
LKTVPPTDPFPQEHWNKRACALIGAFNGPIDAGKQLVDSLLEKLPAPLFNWMGEMPWTAI
EECCCCCCCCCHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHH
NSLFDPFFPKGLQWYWKGDFVKALPDEAIDVHIANAIEAPTPFCLMHLYPIDGAVRRIGR
HHHHCCCCCCCCEEEECCCCHHHCCCCCEEEEEEHHCCCCCCEEEEEEECCCHHHHHHCC
DATPWSARDASFSMVIAGISPDPKDAEALKTWGRAYWSAIHPFNLQGAYVNFLDADEAEN
CCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCC
RVELSYGENYTRLAAIKAKYDPDNLFRVNQNIKPKA
EEEEECCCCEEEEEEEEECCCCCCEEEECCCCCCCC
>Mature Secondary Structure
MDEFAIQGFRGRLIGPSDKDYDDARALYNGMIDKRPKLIARCTDAADIIAAVNYARENKL
CCCCCCCCCCCCEECCCCCCHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHCCCCCE
LLAVRGGGHNGPGLGSCDGGLVIDLSQMRSVRVDPASGTVRVEPGCTAADLDHATHAFGL
EEEEECCCCCCCCCCCCCCCEEEEHHHHCEEEECCCCCEEEECCCCCHHHCCHHHHHHHH
AVPLGIVGSTGVAGLTLGGGTGYLTRKYGLTVDNLLEVDVVLADGSFVTANKDEHVDLFW
HHHHHHCCCCCCCEEEECCCCCEEEEECCCCHHHEEEEEEEEECCCEEECCCCCCEEEEE
AVRGGGGNFGVVTSFLFQAHPAKMVFAGPIFWDARDARQVMSTYRDFIPNAPEELGLFVG
EEECCCCCHHHHHHHHHHCCCCCEEEECCEEECCHHHHHHHHHHHHHCCCCHHHCEEEEE
LKTVPPTDPFPQEHWNKRACALIGAFNGPIDAGKQLVDSLLEKLPAPLFNWMGEMPWTAI
EECCCCCCCCCHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHH
NSLFDPFFPKGLQWYWKGDFVKALPDEAIDVHIANAIEAPTPFCLMHLYPIDGAVRRIGR
HHHHCCCCCCCCEEEECCCCHHHCCCCCEEEEEEHHCCCCCCEEEEEEECCCHHHHHHCC
DATPWSARDASFSMVIAGISPDPKDAEALKTWGRAYWSAIHPFNLQGAYVNFLDADEAEN
CCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCC
RVELSYGENYTRLAAIKAKYDPDNLFRVNQNIKPKA
EEEEECCCCEEEEEEEEECCCCCCEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3622516; 2680607; 2115879 [H]