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The map label for this gene is ybhD [H]

Identifier: 73538241

GI number: 73538241

Start: 1070038

End: 1070940

Strand: Reverse

Name: ybhD [H]

Synonym: Reut_B4412

Alternate gene names: 73538241

Gene position: 1070940-1070038 (Counterclockwise)

Preceding gene: 73538244

Following gene: 73538239

Centisome position: 39.28

GC content: 63.9

Gene sequence:

>903_bases
ATGTCACGCATTAATTTCGGCTTGGAAGACCTGCAGGCATTTGTGGCGATCGCCGAAAAGGGCAGTTTCCGCATGGCTGC
GGAGGCTCTCCACATTTCCCAGCCAGCGCTGAGCCGGCGCATCGAGAAGCTGGAAATGACACTGGGCTCGCGCCTGCTCG
AGCGCACTACGCGCCGCGTGGACATGACCCATATCGGACGCCAGTTCCTGGAGGAGGCTCGCGCCGCTCTGGACATCCTC
GATAGCGCGGTACTGCGGCTCGGCGACGAGGTTGGGCTCCAGCGCGGACTGGTGACCGTGGCAGCGATACCCTCCGCTGC
GTTGCATTTCCTGCCCGACGCCATCTGTCGGTTCGGCAACCGGCATCCGGGCGTGCGCGTACGTGTGATCGACGAGAACG
CGAACGCTGTGCTTGCCAGCGTACTGTCGGGAGAGTCCGATTTCGGGCTCAATTTCATGGGCGGGCAGGAGCCCAACATC
GAATTCCGCGCAATCCGCGCCGAGCCTTATCGGCTGGCATTGCGCCGGGACCATCCGTGGGCCGGACGGGATTGCATCGC
GTGGGAGGAACTCGCGGGACAGAGGATGGTGAGCGTGTCGAAGCAAAGCGGCAATCGCGCCTTGATCGAAAATGCCATCG
CCCATCTCACGCGACGCCCCACGATTCACTACGAAGCCAACCACGTGGTTGGCGTGCTGGCCCTCGTCGAGGCCGGCCTG
GGGATGGCCGTGCTGCCTGGCATGTCGCTACCGCGGGATCATCCACGGCTTTGCGGCATCGAGCTGGTCGAACCTTCCGT
GGATCGGGTCCTGGCGCTGATTCGGCGCCGTGACAGGCCTTTGCAGCCTGCCGCAGAGGCGTTGTATGAAATCCTGACCT
CGGACACGGGACCGGCCGCTTGA

Upstream 100 bases:

>100_bases
ATATGTATTTTCGAGGCCCATGCACAGGGCCCACGTGGACATTGCAAGCATATTCCGCCATGATTGATCTGTAAATTGCA
ACGTTTTGAATAATCGATGC

Downstream 100 bases:

>100_bases
ATCCGGTGGCGGCGGCCGGCGCGCAGGCGTAGCCCTCCCTTGCAAAGCCTGAAAGCCGCCTAGCGTCCCCCGTGTCGCTG
TTTTGCGCCTCCGCCGGCGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 299

Protein sequence:

>300_residues
MSRINFGLEDLQAFVAIAEKGSFRMAAEALHISQPALSRRIEKLEMTLGSRLLERTTRRVDMTHIGRQFLEEARAALDIL
DSAVLRLGDEVGLQRGLVTVAAIPSAALHFLPDAICRFGNRHPGVRVRVIDENANAVLASVLSGESDFGLNFMGGQEPNI
EFRAIRAEPYRLALRRDHPWAGRDCIAWEELAGQRMVSVSKQSGNRALIENAIAHLTRRPTIHYEANHVVGVLALVEAGL
GMAVLPGMSLPRDHPRLCGIELVEPSVDRVLALIRRRDRPLQPAAEALYEILTSDTGPAA

Sequences:

>Translated_300_residues
MSRINFGLEDLQAFVAIAEKGSFRMAAEALHISQPALSRRIEKLEMTLGSRLLERTTRRVDMTHIGRQFLEEARAALDIL
DSAVLRLGDEVGLQRGLVTVAAIPSAALHFLPDAICRFGNRHPGVRVRVIDENANAVLASVLSGESDFGLNFMGGQEPNI
EFRAIRAEPYRLALRRDHPWAGRDCIAWEELAGQRMVSVSKQSGNRALIENAIAHLTRRPTIHYEANHVVGVLALVEAGL
GMAVLPGMSLPRDHPRLCGIELVEPSVDRVLALIRRRDRPLQPAAEALYEILTSDTGPAA
>Mature_299_residues
SRINFGLEDLQAFVAIAEKGSFRMAAEALHISQPALSRRIEKLEMTLGSRLLERTTRRVDMTHIGRQFLEEARAALDILD
SAVLRLGDEVGLQRGLVTVAAIPSAALHFLPDAICRFGNRHPGVRVRVIDENANAVLASVLSGESDFGLNFMGGQEPNIE
FRAIRAEPYRLALRRDHPWAGRDCIAWEELAGQRMVSVSKQSGNRALIENAIAHLTRRPTIHYEANHVVGVLALVEAGLG
MAVLPGMSLPRDHPRLCGIELVEPSVDRVLALIRRRDRPLQPAAEALYEILTSDTGPAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=288, Percent_Identity=42.7083333333333, Blast_Score=248, Evalue=4e-67,
Organism=Escherichia coli, GI1788748, Length=290, Percent_Identity=34.1379310344828, Blast_Score=157, Evalue=1e-39,
Organism=Escherichia coli, GI1790399, Length=291, Percent_Identity=29.553264604811, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI157672245, Length=278, Percent_Identity=28.7769784172662, Blast_Score=118, Evalue=4e-28,
Organism=Escherichia coli, GI1788887, Length=242, Percent_Identity=34.297520661157, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1787879, Length=253, Percent_Identity=32.4110671936759, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI87081904, Length=174, Percent_Identity=35.0574712643678, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1787601, Length=177, Percent_Identity=29.3785310734463, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI1789204, Length=246, Percent_Identity=25.609756097561, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1786401, Length=122, Percent_Identity=36.0655737704918, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI2367136, Length=241, Percent_Identity=26.1410788381743, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787530, Length=249, Percent_Identity=25.7028112449799, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788706, Length=133, Percent_Identity=32.3308270676692, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1787589, Length=162, Percent_Identity=33.9506172839506, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787806, Length=241, Percent_Identity=26.9709543568465, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789173, Length=163, Percent_Identity=28.8343558282209, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788297, Length=291, Percent_Identity=27.8350515463918, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1790208, Length=143, Percent_Identity=29.3706293706294, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787128, Length=128, Percent_Identity=30.46875, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32992; Mature: 32860

Theoretical pI: Translated: 7.31; Mature: 7.31

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRINFGLEDLQAFVAIAEKGSFRMAAEALHISQPALSRRIEKLEMTLGSRLLERTTRRV
CCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
DMTHIGRQFLEEARAALDILDSAVLRLGDEVGLQRGLVTVAAIPSAALHFLPDAICRFGN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCC
RHPGVRVRVIDENANAVLASVLSGESDFGLNFMGGQEPNIEFRAIRAEPYRLALRRDHPW
CCCCEEEEEEECCCHHHHHHHHCCCCCCCCEECCCCCCCCEEEEEECCCEEEEEECCCCC
AGRDCIAWEELAGQRMVSVSKQSGNRALIENAIAHLTRRPTIHYEANHVVGVLALVEAGL
CCCCCHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHCCC
GMAVLPGMSLPRDHPRLCGIELVEPSVDRVLALIRRRDRPLQPAAEALYEILTSDTGPAA
CEEECCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SRINFGLEDLQAFVAIAEKGSFRMAAEALHISQPALSRRIEKLEMTLGSRLLERTTRRV
CCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
DMTHIGRQFLEEARAALDILDSAVLRLGDEVGLQRGLVTVAAIPSAALHFLPDAICRFGN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCC
RHPGVRVRVIDENANAVLASVLSGESDFGLNFMGGQEPNIEFRAIRAEPYRLALRRDHPW
CCCCEEEEEEECCCHHHHHHHHCCCCCCCCEECCCCCCCCEEEEEECCCEEEEEECCCCC
AGRDCIAWEELAGQRMVSVSKQSGNRALIENAIAHLTRRPTIHYEANHVVGVLALVEAGL
CCCCCHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHCCC
GMAVLPGMSLPRDHPRLCGIELVEPSVDRVLALIRRRDRPLQPAAEALYEILTSDTGPAA
CEEECCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]