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The map label for this gene is omp [H]

Identifier: 71892248

GI number: 71892248

Start: 585092

End: 586213

Strand: Reverse

Name: omp [H]

Synonym: BPEN_491

Alternate gene names: 71892248

Gene position: 586213-585092 (Counterclockwise)

Preceding gene: 71892249

Following gene: 71892247

Centisome position: 74.05

GC content: 32.89

Gene sequence:

>1122_bases
ATGAAATTACGGTGTTTTACTAGCCTGGTTGCAACTATGGTTATGGCAAGCACTGCCGTGGCTTCTGAAATTTACAATAA
AGATGGAAATATATTAGATATGTTTGGTAGTCTTGTTGGAGGTCATTATTTTTCTAAAGATAATACTAAAAATGGGGATA
ATTCGTTTGTAAGATATGGTTTTTCTGGAACAACATATATTAATGATCAAATTGTTGGTTTTGGTATGTGGGAGCATGAA
ATTTCCTTAAAGAATACTGAAGGAAGCATCGTAAATAATAATGATAAGGTGTTGCTTGGATATGCAGGAATAAAATTTGG
AAATTTAGGAAGCATTGATTACGGAAGAAATTATGGAGTATTGTATGATGTGGGAGCATGGACAGATGTAACACCAGGAT
TTGGAGGAGATATATTGTTTGTAGATAATTTTTTATCTAATCGTAGTTCGAATGTGATTACATATCGTAATAAAAATTTT
TTTGGTTTCGTGAATGGACTGGATTTTGCCTTGCAATATCAAGGTAAAAATGATGTGAACAAAGCAACGGGTCGTACTTT
AAAAACGGCTAACGGAGAAGGATACGGGGTATCTGCATCTTATTCATTGGACAATGGGTTTGCTGCATCCCTGGCTTACA
CTAATAATAAACGTATCATTGAACAAACTGGTTTAGATAGCAATCTTTGTTGTAATGCTAATGCTGAAGCATACTCCTTG
GGCATAAAATATGATGGAAACGGTATGTATGTAGCAGCAATTTATGGAGAGACTTATAATATGACTCCATTCGGTAGTTT
TTGTGATAATCTTAATCCAGAATATATTTATGGGTTTGTTAATAAAGCTAAGAATATTGAATTAGTGGCCCAATATCAAT
TTGGTTTTGGTTTACGTCCTTCTGTATCTTATTTGTATTCAAAAGCTAATGATGCGGAAAATGATGCTTACAGCAATTTC
TTAAAAAAATGTGTTACAGTTGGAACAAGTTATGTTTTTAATAAAAATATTTGTACTACTATAGATTATAGAATTAATTT
ATTACATAAGGATAGTTTCACCAGTGCGTCTCAGATTTGTACCGATAATGTTATTGCGTTGGGCGTAGCTTACGCATTTT
AA

Upstream 100 bases:

>100_bases
CGCATATAAAGTTGTTGATTTATTTTTGAAGAAAGTTACTGGATGTTATTGAAATTGTTAAATAGTATTTTTTTTATTTA
CTATATGGTGAGGTATTAAT

Downstream 100 bases:

>100_bases
GAATAGGTCGACATTAAATACTAAAACAGGCGAATTAAAATATTAATTCGCCTGTTTTAGTATTTTTTAATGTATCAAGG
AATGGAATATGTCTAAATTA

Product: outer membrane protein

Products: NA

Alternate protein names: Porin ompC [H]

Number of amino acids: Translated: 373; Mature: 373

Protein sequence:

>373_residues
MKLRCFTSLVATMVMASTAVASEIYNKDGNILDMFGSLVGGHYFSKDNTKNGDNSFVRYGFSGTTYINDQIVGFGMWEHE
ISLKNTEGSIVNNNDKVLLGYAGIKFGNLGSIDYGRNYGVLYDVGAWTDVTPGFGGDILFVDNFLSNRSSNVITYRNKNF
FGFVNGLDFALQYQGKNDVNKATGRTLKTANGEGYGVSASYSLDNGFAASLAYTNNKRIIEQTGLDSNLCCNANAEAYSL
GIKYDGNGMYVAAIYGETYNMTPFGSFCDNLNPEYIYGFVNKAKNIELVAQYQFGFGLRPSVSYLYSKANDAENDAYSNF
LKKCVTVGTSYVFNKNICTTIDYRINLLHKDSFTSASQICTDNVIALGVAYAF

Sequences:

>Translated_373_residues
MKLRCFTSLVATMVMASTAVASEIYNKDGNILDMFGSLVGGHYFSKDNTKNGDNSFVRYGFSGTTYINDQIVGFGMWEHE
ISLKNTEGSIVNNNDKVLLGYAGIKFGNLGSIDYGRNYGVLYDVGAWTDVTPGFGGDILFVDNFLSNRSSNVITYRNKNF
FGFVNGLDFALQYQGKNDVNKATGRTLKTANGEGYGVSASYSLDNGFAASLAYTNNKRIIEQTGLDSNLCCNANAEAYSL
GIKYDGNGMYVAAIYGETYNMTPFGSFCDNLNPEYIYGFVNKAKNIELVAQYQFGFGLRPSVSYLYSKANDAENDAYSNF
LKKCVTVGTSYVFNKNICTTIDYRINLLHKDSFTSASQICTDNVIALGVAYAF
>Mature_373_residues
MKLRCFTSLVATMVMASTAVASEIYNKDGNILDMFGSLVGGHYFSKDNTKNGDNSFVRYGFSGTTYINDQIVGFGMWEHE
ISLKNTEGSIVNNNDKVLLGYAGIKFGNLGSIDYGRNYGVLYDVGAWTDVTPGFGGDILFVDNFLSNRSSNVITYRNKNF
FGFVNGLDFALQYQGKNDVNKATGRTLKTANGEGYGVSASYSLDNGFAASLAYTNNKRIIEQTGLDSNLCCNANAEAYSL
GIKYDGNGMYVAAIYGETYNMTPFGSFCDNLNPEYIYGFVNKAKNIELVAQYQFGFGLRPSVSYLYSKANDAENDAYSNF
LKKCVTVGTSYVFNKNICTTIDYRINLLHKDSFTSASQICTDNVIALGVAYAF

Specific function: Forms passive diffusion pores which allow small molecular weight hydrophilic materials across the outer membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family [H]

Homologues:

Organism=Escherichia coli, GI1787641, Length=389, Percent_Identity=45.7583547557841, Blast_Score=318, Evalue=4e-88,
Organism=Escherichia coli, GI1788544, Length=382, Percent_Identity=43.979057591623, Blast_Score=303, Evalue=8e-84,
Organism=Escherichia coli, GI1786436, Length=375, Percent_Identity=44, Blast_Score=293, Evalue=8e-81,
Organism=Escherichia coli, GI1787160, Length=378, Percent_Identity=43.1216931216931, Blast_Score=281, Evalue=5e-77,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001897
- InterPro:   IPR013793
- InterPro:   IPR001702 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 40969; Mature: 40969

Theoretical pI: Translated: 5.40; Mature: 5.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLRCFTSLVATMVMASTAVASEIYNKDGNILDMFGSLVGGHYFSKDNTKNGDNSFVRYG
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCEEECCCCCCCCCCCEEEEC
FSGTTYINDQIVGFGMWEHEISLKNTEGSIVNNNDKVLLGYAGIKFGNLGSIDYGRNYGV
CCCCEEECCEEEEEEEEEEEEEEECCCCCEEECCCEEEEEECCEEECCCCCCCCCCCCCE
LYDVGAWTDVTPGFGGDILFVDNFLSNRSSNVITYRNKNFFGFVNGLDFALQYQGKNDVN
EEECCCCCCCCCCCCCCEEEEEHHHCCCCCCEEEEECCCEEEEECCEEEEEEECCCCCCH
KATGRTLKTANGEGYGVSASYSLDNGFAASLAYTNNKRIIEQTGLDSNLCCNANAEAYSL
HHCCCEEEECCCCCCEEEEEEECCCCEEEEEEEECCCEEEECCCCCCCEEECCCCCEEEE
GIKYDGNGMYVAAIYGETYNMTPFGSFCDNLNPEYIYGFVNKAKNIELVAQYQFGFGLRP
EEEECCCCEEEEEEECCCCCCCCCHHHHHCCCHHEEEEEECCCCCEEEEEEEECCCCCCC
SVSYLYSKANDAENDAYSNFLKKCVTVGTSYVFNKNICTTIDYRINLLHKDSFTSASQIC
CHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEECCCCEEEEEEEEEEEECCCCCCHHHHH
TDNVIALGVAYAF
CCCEEEEEEEECC
>Mature Secondary Structure
MKLRCFTSLVATMVMASTAVASEIYNKDGNILDMFGSLVGGHYFSKDNTKNGDNSFVRYG
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCEEECCCCCCCCCCCEEEEC
FSGTTYINDQIVGFGMWEHEISLKNTEGSIVNNNDKVLLGYAGIKFGNLGSIDYGRNYGV
CCCCEEECCEEEEEEEEEEEEEEECCCCCEEECCCEEEEEECCEEECCCCCCCCCCCCCE
LYDVGAWTDVTPGFGGDILFVDNFLSNRSSNVITYRNKNFFGFVNGLDFALQYQGKNDVN
EEECCCCCCCCCCCCCCEEEEEHHHCCCCCCEEEEECCCEEEEECCEEEEEEECCCCCCH
KATGRTLKTANGEGYGVSASYSLDNGFAASLAYTNNKRIIEQTGLDSNLCCNANAEAYSL
HHCCCEEEECCCCCCEEEEEEECCCCEEEEEEEECCCEEEECCCCCCCEEECCCCCEEEE
GIKYDGNGMYVAAIYGETYNMTPFGSFCDNLNPEYIYGFVNKAKNIELVAQYQFGFGLRP
EEEECCCCEEEEEEECCCCCCCCCHHHHHCCCHHEEEEEECCCCCEEEEEEEECCCCCCC
SVSYLYSKANDAENDAYSNFLKKCVTVGTSYVFNKNICTTIDYRINLLHKDSFTSASQIC
CHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEECCCCEEEEEEEEEEEECCCCCCHHHHH
TDNVIALGVAYAF
CCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2684785; 3412902; 11677608; 12644504; 10405180 [H]