Definition | Candidatus Blochmannia pennsylvanicus str. BPEN, complete genome. |
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Accession | NC_007292 |
Length | 791,654 |
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The map label for this gene is thrS [H]
Identifier: 71892130
GI number: 71892130
Start: 429232
End: 430458
Strand: Direct
Name: thrS [H]
Synonym: BPEN_362
Alternate gene names: 71892130
Gene position: 429232-430458 (Clockwise)
Preceding gene: 71892129
Following gene: 71892131
Centisome position: 54.22
GC content: 31.3
Gene sequence:
>1227_bases ATGTCACAAGTACCTAAAAAAAATGATCATCGCAACCTTGCGAAACAACTACACTTATACCATACACAAAAAGATGCTCC CGGTATGGTATTTTGGCATCAAAATGGATGGATTTTATTACAAGAATTAAAAAAAATTATAAGAACGCAACTTAAAGAAT ATAAATATCAAGAAGTGAAAAGTCCTACCATGATTAATCATACATTATGGAAAAAAACAGGCCATTGGGATAATTATCAT GAACATATATTTACTACTTCTTCAGAAAGTCATGAATATTGTATTAAACCGATGAATTGCCCAGGACATATTCAAATTTT TAATCAAGGTATTAAGTCTTATAAAGATTTGCCTTATCGTATAGCTGAATTTGGAAATTGTCATAGAAACGAACCATCTG GGTCTTTACATGGACTCATGAGAACACGCGAATTTACCCAAGATGATGGTCATATTTTTTGTACAAAAACACAAATATTC GACGAATTAAACCACTGTATCAAAATGATGTATGATATATATAATACATTCGGTTTTAAAACGATTTTGGTAAAATTATC TACTCGTCCTGCAAAGCGAATTGGTACAGATTCGATATGGGATACGGCAGAACAACATTTATCTACTGTACTTCAGCATA ATAATATCTCATTTCAATATCAACCTAATGATGGTGCATTTTATGGTCCTAAAATAGAATTTGCTTTACTTGATTCTTTA GATAGAACTTGGCAATGTGGTACAATACAATTGGATTTTTCTTTACCAAATCTATTAAACGCACGGTATATTGATCGTCA TAATAGTCGCGTAGTCCCCGTAATGATTCACAGAGCAATTCTTGGTTCCATGGAACGATTTATTGGTTTAATAACAGAAG AATACGCAGGATTTTTCCCGACGTGGTTAGCCCCGACACAGGTTGTGCTCATGAATGTCACTGATCAACAATCTGAATAT GTTTCTGTTATAGAAAAAAAGCTAATAAATAAAAAAATAAGAACGAAAGTAGACTTGAGAAATGAGAAAATAGGATTTAA AATTCGTTATTATACCTTGCAACGCATACCTTATATGTTGATTTGCGGAAATAAAGAAATGAATCAAAATACAGTAGCTA TACGTACATATCGAGGTCAAACATTAAAAAACTGTAATATTGATATATTTATAAAAAAATTACTTTGTGAAATTAACAGT TACAGTCTTTATCAAATGGAGGAATAA
Upstream 100 bases:
>100_bases ATTTCTAAGTTTTACTGGATTAAAAACAGTAAAATTAAAAATTGCACATACTTGTAGTCTCTACAGAACAAAAAATAAAT AATGTATAACTCACAAAAAT
Downstream 100 bases:
>100_bases CATATTATTAAATTCGCAAAAAAAATACAATCAATACGACTAAATCGTATTAACAGAGAAATTAGTGCTGTAAAAGTCCG ACTAACCGGAGTAGACGGAA
Product: threonyl-tRNA synthetase
Products: NA
Alternate protein names: Threonine--tRNA ligase; ThrRS [H]
Number of amino acids: Translated: 408; Mature: 407
Protein sequence:
>408_residues MSQVPKKNDHRNLAKQLHLYHTQKDAPGMVFWHQNGWILLQELKKIIRTQLKEYKYQEVKSPTMINHTLWKKTGHWDNYH EHIFTTSSESHEYCIKPMNCPGHIQIFNQGIKSYKDLPYRIAEFGNCHRNEPSGSLHGLMRTREFTQDDGHIFCTKTQIF DELNHCIKMMYDIYNTFGFKTILVKLSTRPAKRIGTDSIWDTAEQHLSTVLQHNNISFQYQPNDGAFYGPKIEFALLDSL DRTWQCGTIQLDFSLPNLLNARYIDRHNSRVVPVMIHRAILGSMERFIGLITEEYAGFFPTWLAPTQVVLMNVTDQQSEY VSVIEKKLINKKIRTKVDLRNEKIGFKIRYYTLQRIPYMLICGNKEMNQNTVAIRTYRGQTLKNCNIDIFIKKLLCEINS YSLYQMEE
Sequences:
>Translated_408_residues MSQVPKKNDHRNLAKQLHLYHTQKDAPGMVFWHQNGWILLQELKKIIRTQLKEYKYQEVKSPTMINHTLWKKTGHWDNYH EHIFTTSSESHEYCIKPMNCPGHIQIFNQGIKSYKDLPYRIAEFGNCHRNEPSGSLHGLMRTREFTQDDGHIFCTKTQIF DELNHCIKMMYDIYNTFGFKTILVKLSTRPAKRIGTDSIWDTAEQHLSTVLQHNNISFQYQPNDGAFYGPKIEFALLDSL DRTWQCGTIQLDFSLPNLLNARYIDRHNSRVVPVMIHRAILGSMERFIGLITEEYAGFFPTWLAPTQVVLMNVTDQQSEY VSVIEKKLINKKIRTKVDLRNEKIGFKIRYYTLQRIPYMLICGNKEMNQNTVAIRTYRGQTLKNCNIDIFIKKLLCEINS YSLYQMEE >Mature_407_residues SQVPKKNDHRNLAKQLHLYHTQKDAPGMVFWHQNGWILLQELKKIIRTQLKEYKYQEVKSPTMINHTLWKKTGHWDNYHE HIFTTSSESHEYCIKPMNCPGHIQIFNQGIKSYKDLPYRIAEFGNCHRNEPSGSLHGLMRTREFTQDDGHIFCTKTQIFD ELNHCIKMMYDIYNTFGFKTILVKLSTRPAKRIGTDSIWDTAEQHLSTVLQHNNISFQYQPNDGAFYGPKIEFALLDSLD RTWQCGTIQLDFSLPNLLNARYIDRHNSRVVPVMIHRAILGSMERFIGLITEEYAGFFPTWLAPTQVVLMNVTDQQSEYV SVIEKKLINKKIRTKVDLRNEKIGFKIRYYTLQRIPYMLICGNKEMNQNTVAIRTYRGQTLKNCNIDIFIKKLLCEINSY SLYQMEE
Specific function: Thrs Is Also A Translational Repressor Protein, It Controls The Translation Of Its Own Gene By Binding To Its mRNA. [C]
COG id: COG0441
COG function: function code J; Threonyl-tRNA synthetase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Homo sapiens, GI38202255, Length=405, Percent_Identity=38.0246913580247, Blast_Score=298, Evalue=7e-81, Organism=Homo sapiens, GI38570111, Length=389, Percent_Identity=38.8174807197943, Blast_Score=295, Evalue=4e-80, Organism=Homo sapiens, GI20070344, Length=419, Percent_Identity=35.5608591885441, Blast_Score=283, Evalue=2e-76, Organism=Escherichia coli, GI1788013, Length=402, Percent_Identity=66.4179104477612, Blast_Score=602, Evalue=1e-173, Organism=Caenorhabditis elegans, GI71984192, Length=396, Percent_Identity=37.8787878787879, Blast_Score=305, Evalue=3e-83, Organism=Caenorhabditis elegans, GI71984184, Length=396, Percent_Identity=37.8787878787879, Blast_Score=305, Evalue=3e-83, Organism=Saccharomyces cerevisiae, GI6322112, Length=393, Percent_Identity=39.1857506361323, Blast_Score=307, Evalue=3e-84, Organism=Saccharomyces cerevisiae, GI6322654, Length=393, Percent_Identity=37.4045801526718, Blast_Score=281, Evalue=2e-76, Organism=Drosophila melanogaster, GI24583839, Length=395, Percent_Identity=38.4810126582278, Blast_Score=309, Evalue=3e-84, Organism=Drosophila melanogaster, GI24583842, Length=395, Percent_Identity=38.4810126582278, Blast_Score=309, Evalue=3e-84, Organism=Drosophila melanogaster, GI28574141, Length=395, Percent_Identity=38.4810126582278, Blast_Score=309, Evalue=3e-84,
Paralogues:
None
Copy number: 700 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002314 - InterPro: IPR006195 - InterPro: IPR004154 - InterPro: IPR012675 - InterPro: IPR004095 - InterPro: IPR012676 - InterPro: IPR002320 - InterPro: IPR018163 - InterPro: IPR012947 [H]
Pfam domain/function: PF03129 HGTP_anticodon; PF02824 TGS; PF00587 tRNA-synt_2b; PF07973 tRNA_SAD [H]
EC number: =6.1.1.3 [H]
Molecular weight: Translated: 48046; Mature: 47915
Theoretical pI: Translated: 9.17; Mature: 9.17
Prosite motif: PS00024 HEMOPEXIN ; PS50862 AA_TRNA_LIGASE_II
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQVPKKNDHRNLAKQLHLYHTQKDAPGMVFWHQNGWILLQELKKIIRTQLKEYKYQEVK CCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCEEEHHHHHHHHHHHHHHHHHHHCC SPTMINHTLWKKTGHWDNYHEHIFTTSSESHEYCIKPMNCPGHIQIFNQGIKSYKDLPYR CCCCCHHHHHHCCCCCCCCHHEEEECCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCHH IAEFGNCHRNEPSGSLHGLMRTREFTQDDGHIFCTKTQIFDELNHCIKMMYDIYNTFGFK HHHHCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCE TILVKLSTRPAKRIGTDSIWDTAEQHLSTVLQHNNISFQYQPNDGAFYGPKIEFALLDSL EEEEEECCCCHHHCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCEECCEEEEHHHHCC DRTWQCGTIQLDFSLPNLLNARYIDRHNSRVVPVMIHRAILGSMERFIGLITEEYAGFFP CCCCCCCEEEEECCCCCHHCCHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCC TWLAPTQVVLMNVTDQQSEYVSVIEKKLINKKIRTKVDLRNEKIGFKIRYYTLQRIPYML CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEE ICGNKEMNQNTVAIRTYRGQTLKNCNIDIFIKKLLCEINSYSLYQMEE EECCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEECC >Mature Secondary Structure SQVPKKNDHRNLAKQLHLYHTQKDAPGMVFWHQNGWILLQELKKIIRTQLKEYKYQEVK CCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCEEEHHHHHHHHHHHHHHHHHHHCC SPTMINHTLWKKTGHWDNYHEHIFTTSSESHEYCIKPMNCPGHIQIFNQGIKSYKDLPYR CCCCCHHHHHHCCCCCCCCHHEEEECCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCHH IAEFGNCHRNEPSGSLHGLMRTREFTQDDGHIFCTKTQIFDELNHCIKMMYDIYNTFGFK HHHHCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCE TILVKLSTRPAKRIGTDSIWDTAEQHLSTVLQHNNISFQYQPNDGAFYGPKIEFALLDSL EEEEEECCCCHHHCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCEECCEEEEHHHHCC DRTWQCGTIQLDFSLPNLLNARYIDRHNSRVVPVMIHRAILGSMERFIGLITEEYAGFFP CCCCCCCEEEEECCCCCHHCCHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCC TWLAPTQVVLMNVTDQQSEYVSVIEKKLINKKIRTKVDLRNEKIGFKIRYYTLQRIPYML CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEE ICGNKEMNQNTVAIRTYRGQTLKNCNIDIFIKKLLCEINSYSLYQMEE EECCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA