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The map label for this gene is ychF [H]

Identifier: 71892122

GI number: 71892122

Start: 418754

End: 419830

Strand: Reverse

Name: ychF [H]

Synonym: BPEN_354

Alternate gene names: 71892122

Gene position: 419830-418754 (Counterclockwise)

Preceding gene: 71892123

Following gene: 71892119

Centisome position: 53.03

GC content: 29.06

Gene sequence:

>1077_bases
ATGCAAATTGATTGTGGTATTATCGGATTACCGAATGTGGGTAAATCTACTGTATTTAGCGTATTGACTAATGCACCTGT
TAAAATATCTAACTTCCCTTTTTGTACTATTCATCCCAATATATCTGTGGTTCGGATACCTGATCCGCGTGTATATCAAT
TAGCAGGTATTGTTGCGTCACGTGAAACAGTACATGGTAAGATTAAATTTGTAGATATTGCCGGTTTAATAAAAGGGGCT
GCTCAAGGTATTGGTCTAGGTAGCAAAATTTTAAATCATATTCAAACAACAAAAGTATTGTGTCATGTGGTACGTTGTTT
TGATGATAATCAAACTGTTCATGTTTTTAATAATATAGATCCCTGTAGAGATGCGGACATTGTTAATACCGAACTTATAT
TATTTGATATTTCTCAGTGCGAAAAAAGTATTTGTTCTTTACAAAAAAAACATAAACTTATTAACGAAAATATTGAACAA
CAGCTATTCGTATTGAAAAAATGTTTGGATTATTTATATGATGGAGTTCTTTTAAGGAAGGTACATTTTTCTAATATAGA
AAGAACGAATATTGAAAAATTTAATTTTTTAACTAACAAACCAATTATTTATTTTGCTAATATTGATGAAAAATCTGTTA
CGAATAATACTTATTTAAATAAATTGCACGCATTTGCATTTAATAATAGTATACCATTGATCTCATGTTGTGCAATGTTA
TCTTCATCAAAAAATAGAGATGATCGTTTTAAAACAGCTATGAAACAGCAAAAAGATATATTGTGTGATATAGTTAGTGT
TATTTTTTCTGTGTTAAATTTACGTACTTTTTTTACTATTAATTCACATATGACACGTGCTTGGATATATGTAGTCGGGA
TGACTGCATTAGAAGCAGCTAAAAAAGTACATAGTGATTTTAAAAAGGGTTTTATTCGTGTTCAAATTATTAAGTTCGAT
GATTTTATTTTTTATCGTGGGGAATTAGGTGCAAAGAAAGCTGGTAAGATATGTTATGCAGGTAAAGATTATTGTGTAAA
GGATGGGGATATATTGAAGTTTTTATTTCAAATTTAG

Upstream 100 bases:

>100_bases
TTTATAGAAATGTTGATTTAAAAATGTTTAATTTTAATTATAAAAATATTGGTTGCAACAATGGATTTTAATATTTATTT
TTTGATTGTTAAAAAAATTT

Downstream 100 bases:

>100_bases
TGTATTTATTATCTTAAAAATTTTTGGGGTAGTTAACAACAATAGCCCGGTCTATTGTTTCTATAGAAACAATAGACCGG
GCTATTGTTGTTATATGCGG

Product: GTP-dependent nucleic acid-binding protein EngD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 358; Mature: 358

Protein sequence:

>358_residues
MQIDCGIIGLPNVGKSTVFSVLTNAPVKISNFPFCTIHPNISVVRIPDPRVYQLAGIVASRETVHGKIKFVDIAGLIKGA
AQGIGLGSKILNHIQTTKVLCHVVRCFDDNQTVHVFNNIDPCRDADIVNTELILFDISQCEKSICSLQKKHKLINENIEQ
QLFVLKKCLDYLYDGVLLRKVHFSNIERTNIEKFNFLTNKPIIYFANIDEKSVTNNTYLNKLHAFAFNNSIPLISCCAML
SSSKNRDDRFKTAMKQQKDILCDIVSVIFSVLNLRTFFTINSHMTRAWIYVVGMTALEAAKKVHSDFKKGFIRVQIIKFD
DFIFYRGELGAKKAGKICYAGKDYCVKDGDILKFLFQI

Sequences:

>Translated_358_residues
MQIDCGIIGLPNVGKSTVFSVLTNAPVKISNFPFCTIHPNISVVRIPDPRVYQLAGIVASRETVHGKIKFVDIAGLIKGA
AQGIGLGSKILNHIQTTKVLCHVVRCFDDNQTVHVFNNIDPCRDADIVNTELILFDISQCEKSICSLQKKHKLINENIEQ
QLFVLKKCLDYLYDGVLLRKVHFSNIERTNIEKFNFLTNKPIIYFANIDEKSVTNNTYLNKLHAFAFNNSIPLISCCAML
SSSKNRDDRFKTAMKQQKDILCDIVSVIFSVLNLRTFFTINSHMTRAWIYVVGMTALEAAKKVHSDFKKGFIRVQIIKFD
DFIFYRGELGAKKAGKICYAGKDYCVKDGDILKFLFQI
>Mature_358_residues
MQIDCGIIGLPNVGKSTVFSVLTNAPVKISNFPFCTIHPNISVVRIPDPRVYQLAGIVASRETVHGKIKFVDIAGLIKGA
AQGIGLGSKILNHIQTTKVLCHVVRCFDDNQTVHVFNNIDPCRDADIVNTELILFDISQCEKSICSLQKKHKLINENIEQ
QLFVLKKCLDYLYDGVLLRKVHFSNIERTNIEKFNFLTNKPIIYFANIDEKSVTNNTYLNKLHAFAFNNSIPLISCCAML
SSSKNRDDRFKTAMKQQKDILCDIVSVIFSVLNLRTFFTINSHMTRAWIYVVGMTALEAAKKVHSDFKKGFIRVQIIKFD
DFIFYRGELGAKKAGKICYAGKDYCVKDGDILKFLFQI

Specific function: GTP-dependent nucleic acid-binding protein which may act as a translation factor [H]

COG id: COG0012

COG function: function code J; Predicted GTPase, probable translation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI58761500, Length=372, Percent_Identity=35.2150537634409, Blast_Score=204, Evalue=1e-52,
Organism=Homo sapiens, GI58761502, Length=171, Percent_Identity=33.9181286549708, Blast_Score=96, Evalue=4e-20,
Organism=Escherichia coli, GI1787454, Length=363, Percent_Identity=44.0771349862259, Blast_Score=338, Evalue=3e-94,
Organism=Escherichia coli, GI1789574, Length=129, Percent_Identity=32.5581395348837, Blast_Score=83, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17509631, Length=366, Percent_Identity=35.2459016393443, Blast_Score=207, Evalue=5e-54,
Organism=Saccharomyces cerevisiae, GI6319499, Length=369, Percent_Identity=33.8753387533875, Blast_Score=192, Evalue=5e-50,
Organism=Saccharomyces cerevisiae, GI6321773, Length=379, Percent_Identity=32.7176781002639, Blast_Score=170, Evalue=3e-43,
Organism=Saccharomyces cerevisiae, GI6321649, Length=170, Percent_Identity=30.5882352941176, Blast_Score=71, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24640873, Length=364, Percent_Identity=36.5384615384615, Blast_Score=214, Evalue=9e-56,
Organism=Drosophila melanogaster, GI24640877, Length=364, Percent_Identity=36.5384615384615, Blast_Score=214, Evalue=9e-56,
Organism=Drosophila melanogaster, GI24640875, Length=364, Percent_Identity=36.5384615384615, Blast_Score=214, Evalue=9e-56,
Organism=Drosophila melanogaster, GI24640879, Length=326, Percent_Identity=33.4355828220859, Blast_Score=162, Evalue=3e-40,
Organism=Drosophila melanogaster, GI24585318, Length=154, Percent_Identity=35.0649350649351, Blast_Score=79, Evalue=7e-15,

Paralogues:

None

Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012675
- InterPro:   IPR004396
- InterPro:   IPR013029
- InterPro:   IPR006073
- InterPro:   IPR002917
- InterPro:   IPR012676
- InterPro:   IPR023192 [H]

Pfam domain/function: PF01926 MMR_HSR1; PF06071 YchF-GTPase_C [H]

EC number: NA

Molecular weight: Translated: 40504; Mature: 40504

Theoretical pI: Translated: 9.27; Mature: 9.27

Prosite motif: PS00443 GATASE_TYPE_II

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
3.6 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIDCGIIGLPNVGKSTVFSVLTNAPVKISNFPFCTIHPNISVVRIPDPRVYQLAGIVAS
CEECCCEEECCCCCHHHHHHHHHCCCEEECCCCEEEECCCEEEEECCCCCHHHHHHHHHC
RETVHGKIKFVDIAGLIKGAAQGIGLGSKILNHIQTTKVLCHVVRCFDDNQTVHVFNNID
CHHHCCEEEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCC
PCRDADIVNTELILFDISQCEKSICSLQKKHKLINENIEQQLFVLKKCLDYLYDGVLLRK
CCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEH
VHFSNIERTNIEKFNFLTNKPIIYFANIDEKSVTNNTYLNKLHAFAFNNSIPLISCCAML
HHHCCCCCCCCHHEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHH
SSSKNRDDRFKTAMKQQKDILCDIVSVIFSVLNLRTFFTINSHMTRAWIYVVGMTALEAA
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCHHHEEHHHHHHHHHHHHH
KKVHSDFKKGFIRVQIIKFDDFIFYRGELGAKKAGKICYAGKDYCVKDGDILKFLFQI
HHHHHHHHCCEEEEEEEEECCEEEECCCCCCCCCCCEEECCCCEEECCCHHHHHHHCC
>Mature Secondary Structure
MQIDCGIIGLPNVGKSTVFSVLTNAPVKISNFPFCTIHPNISVVRIPDPRVYQLAGIVAS
CEECCCEEECCCCCHHHHHHHHHCCCEEECCCCEEEECCCEEEEECCCCCHHHHHHHHHC
RETVHGKIKFVDIAGLIKGAAQGIGLGSKILNHIQTTKVLCHVVRCFDDNQTVHVFNNID
CHHHCCEEEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCC
PCRDADIVNTELILFDISQCEKSICSLQKKHKLINENIEQQLFVLKKCLDYLYDGVLLRK
CCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEH
VHFSNIERTNIEKFNFLTNKPIIYFANIDEKSVTNNTYLNKLHAFAFNNSIPLISCCAML
HHHCCCCCCCCHHEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHH
SSSKNRDDRFKTAMKQQKDILCDIVSVIFSVLNLRTFFTINSHMTRAWIYVVGMTALEAA
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCHHHEEHHHHHHHHHHHHH
KKVHSDFKKGFIRVQIIKFDDFIFYRGELGAKKAGKICYAGKDYCVKDGDILKFLFQI
HHHHHHHHCCEEEEEEEEECCEEEECCCCCCCCCCCEEECCCCEEECCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]