BacMap

Definition	Xanthomonas campestris pv. campestris str. 8004 chromosome, complete genome.
Accession	NC_007086
Length	5,148,708

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The map label for this gene is ycdF [H]

Identifier: 66767068

GI number: 66767068

Start: 877383

End: 878120

Strand: Reverse

Name: ycdF [H]

Synonym: XC_0733

Alternate gene names: 66767068

Gene position: 878120-877383 (Counterclockwise)

Preceding gene: 77761111

Following gene: 66767062

Centisome position: 17.06

GC content: 70.19

Gene sequence:

>738_bases
ATGACAGACAGTTCCAAGGTGGTCCTGATCACCGGTGCCGCCCGCCGCATCGGCGCGCAGATCGCCACCACCCTGCACGG
CGCCGGCTACCGCGTTGCTCTGCATGCGCACCGCTCCGGCGATGCATTGGCCGCGCGCGTGGCGGCGCTATGCGCCCAGC
GCGCGGGCAGCGCCTGTGCACTGCAGGCCGATCTGCGCACGCCCGAGGCACCGGCCCAGCTGGTGGACGCCTGTGTGGCT
GCATTCGGCCGCCTGGATGCGGTGGTCAACAATGCCAGCGCGTTTTATCCCACCGTGCTGGGCGAGGCCACGCCGGCGCA
ATGGGACGAGTTGTTCGCGGTGAACGCACGCGCTCCGTTCTTCATTGCACAGGCCGCTGCGGCGCAGTTGCGCGCGCACC
ACGGCGCCATCGTCAACCTCACCGATCTGCATGCCGAACAACCCATGCGCCAGCACCCGCTGTATGGCGCCTCCAAGAGC
GCGCTGGAAATGCTGACCCGCTCGCTGGCGCTGGAGCTGGCGCCGCAGGTCCGCGTCAATGCCGTCGCACCGGGCGCGAT
CCTGTGGCCGGAAGACGGCAAGGCCGACGCCGCCAAGCAGGCACTGCTCGCGCGCACGCCGCTGGCGCGCATCGGCACGC
CCGAAGAAGTGGCCGAGGCCGTGCGCTGGTTGCTGGACGATGCCAGCTTCATCACCGGCCATACCTTGCGCGTGGACGGC
GGCCGCCGGCTCAGCTGA

Upstream 100 bases:

>100_bases
GTCCTGATCGGGAACGGGAAGGTCGGCGTGCATGCGGGCACCGGTTGCGGAGACAATGCACAGGATAGCCGAGCCTTTCG
CAACGCCGAGCGAGTACGCC

Downstream 100 bases:

>100_bases
GCGCGGTTACTGCGGCAATGCCACCGCGTTGTCCAGTTCCACCGTGGTGAACGCGCTGCCGTATTGCGGATGCGCCTGCC
ACAACGCCGCCAGGGTCTTG

Product: pteridine reductase

Products: NA

Alternate protein names: GLCDH-II; GDH-II; General stress protein 74; GSP74 [H]

Number of amino acids: Translated: 245; Mature: 244

Protein sequence:

>245_residues
MTDSSKVVLITGAARRIGAQIATTLHGAGYRVALHAHRSGDALAARVAALCAQRAGSACALQADLRTPEAPAQLVDACVA
AFGRLDAVVNNASAFYPTVLGEATPAQWDELFAVNARAPFFIAQAAAAQLRAHHGAIVNLTDLHAEQPMRQHPLYGASKS
ALEMLTRSLALELAPQVRVNAVAPGAILWPEDGKADAAKQALLARTPLARIGTPEEVAEAVRWLLDDASFITGHTLRVDG
GRRLS

Sequences:

>Translated_245_residues
MTDSSKVVLITGAARRIGAQIATTLHGAGYRVALHAHRSGDALAARVAALCAQRAGSACALQADLRTPEAPAQLVDACVA
AFGRLDAVVNNASAFYPTVLGEATPAQWDELFAVNARAPFFIAQAAAAQLRAHHGAIVNLTDLHAEQPMRQHPLYGASKS
ALEMLTRSLALELAPQVRVNAVAPGAILWPEDGKADAAKQALLARTPLARIGTPEEVAEAVRWLLDDASFITGHTLRVDG
GRRLS
>Mature_244_residues
TDSSKVVLITGAARRIGAQIATTLHGAGYRVALHAHRSGDALAARVAALCAQRAGSACALQADLRTPEAPAQLVDACVAA
FGRLDAVVNNASAFYPTVLGEATPAQWDELFAVNARAPFFIAQAAAAQLRAHHGAIVNLTDLHAEQPMRQHPLYGASKSA
LEMLTRSLALELAPQVRVNAVAPGAILWPEDGKADAAKQALLARTPLARIGTPEEVAEAVRWLLDDASFITGHTLRVDGG
RRLS

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI19923817, Length=259, Percent_Identity=29.7297297297297, Blast_Score=101, Evalue=7e-22,
Organism=Homo sapiens, GI7705925, Length=245, Percent_Identity=33.469387755102, Blast_Score=100, Evalue=8e-22,
Organism=Homo sapiens, GI32483357, Length=251, Percent_Identity=31.8725099601594, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI59889578, Length=182, Percent_Identity=36.8131868131868, Blast_Score=91, Evalue=7e-19,
Organism=Homo sapiens, GI10190704, Length=248, Percent_Identity=30.6451612903226, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI15277342, Length=248, Percent_Identity=29.8387096774194, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI40254992, Length=241, Percent_Identity=29.8755186721992, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI126723750, Length=254, Percent_Identity=28.3464566929134, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI5031737, Length=246, Percent_Identity=29.2682926829268, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI4503301, Length=217, Percent_Identity=25.8064516129032, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI33667109, Length=188, Percent_Identity=29.7872340425532, Blast_Score=69, Evalue=6e-12,
Organism=Escherichia coli, GI1788459, Length=246, Percent_Identity=32.9268292682927, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1787335, Length=245, Percent_Identity=30.2040816326531, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI1787891, Length=240, Percent_Identity=31.6666666666667, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1789208, Length=189, Percent_Identity=34.9206349206349, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI2367175, Length=258, Percent_Identity=32.5581395348837, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1790717, Length=254, Percent_Identity=32.6771653543307, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI1787905, Length=247, Percent_Identity=31.1740890688259, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1786812, Length=261, Percent_Identity=31.8007662835249, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI2367365, Length=246, Percent_Identity=33.3333333333333, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI87082160, Length=244, Percent_Identity=26.2295081967213, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI87082100, Length=261, Percent_Identity=29.8850574712644, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1787526, Length=245, Percent_Identity=26.530612244898, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789378, Length=246, Percent_Identity=29.2682926829268, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787820, Length=230, Percent_Identity=24.7826086956522, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788891, Length=146, Percent_Identity=34.2465753424658, Blast_Score=63, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71994600, Length=253, Percent_Identity=36.3636363636364, Blast_Score=129, Evalue=1e-30,
Organism=Caenorhabditis elegans, GI71994604, Length=247, Percent_Identity=33.6032388663968, Blast_Score=120, Evalue=7e-28,
Organism=Caenorhabditis elegans, GI115534694, Length=249, Percent_Identity=34.5381526104418, Blast_Score=117, Evalue=4e-27,
Organism=Caenorhabditis elegans, GI17562910, Length=262, Percent_Identity=32.0610687022901, Blast_Score=110, Evalue=6e-25,
Organism=Caenorhabditis elegans, GI17560676, Length=250, Percent_Identity=32.4, Blast_Score=104, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI72000259, Length=260, Percent_Identity=30.7692307692308, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17559104, Length=263, Percent_Identity=29.277566539924, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI193204405, Length=264, Percent_Identity=30.3030303030303, Blast_Score=95, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI17562906, Length=265, Percent_Identity=29.811320754717, Blast_Score=94, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI17561402, Length=249, Percent_Identity=30.1204819277108, Blast_Score=94, Evalue=8e-20,
Organism=Caenorhabditis elegans, GI17544670, Length=264, Percent_Identity=28.030303030303, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17560332, Length=267, Percent_Identity=28.0898876404494, Blast_Score=91, Evalue=8e-19,
Organism=Caenorhabditis elegans, GI17531453, Length=263, Percent_Identity=29.6577946768061, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI25147288, Length=249, Percent_Identity=31.7269076305221, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17562904, Length=261, Percent_Identity=28.3524904214559, Blast_Score=87, Evalue=7e-18,
Organism=Caenorhabditis elegans, GI17563726, Length=257, Percent_Identity=29.9610894941634, Blast_Score=87, Evalue=7e-18,
Organism=Caenorhabditis elegans, GI17560150, Length=264, Percent_Identity=29.5454545454545, Blast_Score=87, Evalue=8e-18,
Organism=Caenorhabditis elegans, GI17562908, Length=263, Percent_Identity=28.5171102661597, Blast_Score=84, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI17508651, Length=251, Percent_Identity=31.0756972111554, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17562990, Length=262, Percent_Identity=30.5343511450382, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17555706, Length=244, Percent_Identity=29.5081967213115, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17560220, Length=268, Percent_Identity=28.7313432835821, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17565030, Length=261, Percent_Identity=26.4367816091954, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17538486, Length=266, Percent_Identity=26.3157894736842, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17551412, Length=262, Percent_Identity=27.8625954198473, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17538480, Length=265, Percent_Identity=28.3018867924528, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17536025, Length=251, Percent_Identity=27.4900398406374, Blast_Score=72, Evalue=3e-13,
Organism=Saccharomyces cerevisiae, GI6324126, Length=187, Percent_Identity=30.4812834224599, Blast_Score=86, Evalue=8e-18,
Organism=Drosophila melanogaster, GI23397609, Length=251, Percent_Identity=35.0597609561753, Blast_Score=114, Evalue=5e-26,
Organism=Drosophila melanogaster, GI21355319, Length=247, Percent_Identity=31.9838056680162, Blast_Score=105, Evalue=3e-23,
Organism=Drosophila melanogaster, GI21357041, Length=251, Percent_Identity=33.4661354581673, Blast_Score=104, Evalue=6e-23,
Organism=Drosophila melanogaster, GI28571526, Length=246, Percent_Identity=33.3333333333333, Blast_Score=104, Evalue=7e-23,
Organism=Drosophila melanogaster, GI24643142, Length=245, Percent_Identity=34.2857142857143, Blast_Score=101, Evalue=4e-22,
Organism=Drosophila melanogaster, GI24644339, Length=252, Percent_Identity=34.1269841269841, Blast_Score=101, Evalue=5e-22,
Organism=Drosophila melanogaster, GI24644337, Length=251, Percent_Identity=34.6613545816733, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24639444, Length=245, Percent_Identity=28.5714285714286, Blast_Score=84, Evalue=7e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: =1.1.1.47 [H]

Molecular weight: Translated: 25743; Mature: 25611

Theoretical pI: Translated: 8.13; Mature: 8.13

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDSSKVVLITGAARRIGAQIATTLHGAGYRVALHAHRSGDALAARVAALCAQRAGSACA
CCCCCCEEEEECCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCEEE
LQADLRTPEAPAQLVDACVAAFGRLDAVVNNASAFYPTVLGEATPAQWDELFAVNARAPF
EEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHEEEECCCCCH
FIAQAAAAQLRAHHGAIVNLTDLHAEQPMRQHPLYGASKSALEMLTRSLALELAPQVRVN
HHHHHHHHHHHHHCCCEEEEHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEE
AVAPGAILWPEDGKADAAKQALLARTPLARIGTPEEVAEAVRWLLDDASFITGHTLRVDG
EECCCEEECCCCCCHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHCCCHHHCCCEEEECC
GRRLS
CCCCC
>Mature Secondary Structure 
TDSSKVVLITGAARRIGAQIATTLHGAGYRVALHAHRSGDALAARVAALCAQRAGSACA
CCCCCEEEEECCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCEEE
LQADLRTPEAPAQLVDACVAAFGRLDAVVNNASAFYPTVLGEATPAQWDELFAVNARAPF
EEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHEEEECCCCCH
FIAQAAAAQLRAHHGAIVNLTDLHAEQPMRQHPLYGASKSALEMLTRSLALELAPQVRVN
HHHHHHHHHHHHHCCCEEEEHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEE
AVAPGAILWPEDGKADAAKQALLARTPLARIGTPEEVAEAVRWLLDDASFITGHTLRVDG
EECCCEEECCCCCCHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHCCCHHHCCCEEEECC
GRRLS
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274031; 9384377; 9298659 [H]