| Definition | Xanthomonas campestris pv. campestris str. 8004 chromosome, complete genome. |
|---|---|
| Accession | NC_007086 |
| Length | 5,148,708 |
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The map label for this gene is 77761111
Identifier: 77761111
GI number: 77761111
Start: 879818
End: 880684
Strand: Reverse
Name: 77761111
Synonym: XC_0735
Alternate gene names: NA
Gene position: 880684-879818 (Counterclockwise)
Preceding gene: 66767093
Following gene: 66767068
Centisome position: 17.1
GC content: 67.7
Gene sequence:
>867_bases ATGACAAACACCTCCATTCCCGCCGATTTGGGCGACTGGATCATTGCCCAGGCCATCGCCGGACACCCGCCCGAGCACAC GCTGCAACCGCTGCTGGAAGCGGGCTGGAGCGAGCAGGACGCCATCGATGCGGTGGAAGCGCTGGTACGCGCGCATGTGC AGGCACACGCGCAGGCGCACGGCCTGCCGGTGCCGGTGCCGGTGCGCGTGCCCGCACCGCTGCAGGCCGACGCGTCGTCG CTGCTGGATCTGGGCGATCGCCAGGTGCAGGTACTGGTCAGCCTGATGCTGCCGCGCGTGGTGGTGCTGGGCGGCCTGCT CGCCGATGACGAATGCGATGCATTGATCGCACTGGCACGCCCGCAACTGGCCCGCTCGCGCACCGTGGACAACCGCGACG GCAGCGAGATCGTGCATGCTGCGCGCACCAGCCACAGCATGGCCCTGCAACCGGGCCAGGATGCGTTATGTCAACGCATC GAAGCGCGCATTGCGCAGCTGCTGGAATGGCCGGTGGAGCACGGCGAAGGGCTGCAGGTACTGCGCTATGCCACCGGTGC GCAGTACGCGCCGCATTACGATTACTTCGAACCGGATGCCCCCGGCACGCCAGTGCTGTTGCAGCACGGCGGGCAACGCG TCGCCTCGCTGGTGATGTACCTCAACACGCCCGAACGCGGCGGCGCCACGCGCTTTCCCGATGTGCATCTGGACGTGGCC GCGGTGAAAGGCAATGCGGTGTTCTTCAGCTACGACCGCCCACATCCGATGACACGCACCCTGCACGCCGGCGCACCGGT GCTGGCCGGCGAAAAATGGGTGGCCACCAAATGGCTGCGCGAACGCCCGCTGCACGCACCGACCTGA
Upstream 100 bases:
>100_bases TCAAGATCCCCGTCACTTTTATAGAGGGCGTGTGTTGCATTTGTCTTACGCGACACACGCTGACACACAGCTGCCACATG TCGGCATGCACTGTAGCGGG
Downstream 100 bases:
>100_bases TCGGTGCTGCAGCGTGCCGGCATGCGTGGGCTTTCGTGGCGGTGTTAGCGGCTGCCGAACACGCGTTGGTCGATGCGCAG CATCACCAGGCGCAGTGGCG
Product: hypothetical protein
Products: NA
Alternate protein names: 2OG-Fe(II) Oxygenase; Prolyl 4-Hydroxylase Alpha Subunit; Oxidoreductase 2OG-Fe(II) Oxygenase Family; Oxygenase; Procollagen-Proline 2-Oxoglutarate-4-Dioxygenase; Response Regulator Receiver Domain-Containing Protein; 2OG-Fe(II) Oxygenase Family Oxidoreductase; Prolyl 4-Hydroxylase Subunit Alpha; 2OG-Fe(II) Oxygenase Superfamily Protein; 2OG-Fe(II) Oxygenase Family Protein; Procollagen-Proline 2-Oxoglutarate-4- Dioxygenase; Prolyl 4-Hydroxylase
Number of amino acids: Translated: 288; Mature: 287
Protein sequence:
>288_residues MTNTSIPADLGDWIIAQAIAGHPPEHTLQPLLEAGWSEQDAIDAVEALVRAHVQAHAQAHGLPVPVPVRVPAPLQADASS LLDLGDRQVQVLVSLMLPRVVVLGGLLADDECDALIALARPQLARSRTVDNRDGSEIVHAARTSHSMALQPGQDALCQRI EARIAQLLEWPVEHGEGLQVLRYATGAQYAPHYDYFEPDAPGTPVLLQHGGQRVASLVMYLNTPERGGATRFPDVHLDVA AVKGNAVFFSYDRPHPMTRTLHAGAPVLAGEKWVATKWLRERPLHAPT
Sequences:
>Translated_288_residues MTNTSIPADLGDWIIAQAIAGHPPEHTLQPLLEAGWSEQDAIDAVEALVRAHVQAHAQAHGLPVPVPVRVPAPLQADASS LLDLGDRQVQVLVSLMLPRVVVLGGLLADDECDALIALARPQLARSRTVDNRDGSEIVHAARTSHSMALQPGQDALCQRI EARIAQLLEWPVEHGEGLQVLRYATGAQYAPHYDYFEPDAPGTPVLLQHGGQRVASLVMYLNTPERGGATRFPDVHLDVA AVKGNAVFFSYDRPHPMTRTLHAGAPVLAGEKWVATKWLRERPLHAPT >Mature_287_residues TNTSIPADLGDWIIAQAIAGHPPEHTLQPLLEAGWSEQDAIDAVEALVRAHVQAHAQAHGLPVPVPVRVPAPLQADASSL LDLGDRQVQVLVSLMLPRVVVLGGLLADDECDALIALARPQLARSRTVDNRDGSEIVHAARTSHSMALQPGQDALCQRIE ARIAQLLEWPVEHGEGLQVLRYATGAQYAPHYDYFEPDAPGTPVLLQHGGQRVASLVMYLNTPERGGATRFPDVHLDVAA VKGNAVFFSYDRPHPMTRTLHAGAPVLAGEKWVATKWLRERPLHAPT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI4758868, Length=190, Percent_Identity=35.7894736842105, Blast_Score=112, Evalue=4e-25, Organism=Homo sapiens, GI217272863, Length=190, Percent_Identity=35.7894736842105, Blast_Score=112, Evalue=4e-25, Organism=Homo sapiens, GI63252886, Length=187, Percent_Identity=35.8288770053476, Blast_Score=111, Evalue=7e-25, Organism=Homo sapiens, GI63252893, Length=189, Percent_Identity=35.4497354497354, Blast_Score=108, Evalue=5e-24, Organism=Homo sapiens, GI63252891, Length=189, Percent_Identity=35.4497354497354, Blast_Score=108, Evalue=5e-24, Organism=Homo sapiens, GI217272861, Length=189, Percent_Identity=35.4497354497354, Blast_Score=108, Evalue=5e-24, Organism=Homo sapiens, GI217272849, Length=188, Percent_Identity=36.7021276595745, Blast_Score=107, Evalue=1e-23, Organism=Homo sapiens, GI63252888, Length=188, Percent_Identity=36.7021276595745, Blast_Score=107, Evalue=1e-23, Organism=Homo sapiens, GI33589818, Length=188, Percent_Identity=34.0425531914894, Blast_Score=99, Evalue=5e-21, Organism=Homo sapiens, GI217272851, Length=188, Percent_Identity=32.4468085106383, Blast_Score=82, Evalue=5e-16, Organism=Caenorhabditis elegans, GI17552840, Length=196, Percent_Identity=29.5918367346939, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17541712, Length=197, Percent_Identity=33.502538071066, Blast_Score=105, Evalue=3e-23, Organism=Caenorhabditis elegans, GI193209070, Length=159, Percent_Identity=28.9308176100629, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI193209068, Length=153, Percent_Identity=29.4117647058824, Blast_Score=67, Evalue=7e-12, Organism=Drosophila melanogaster, GI24651477, Length=255, Percent_Identity=30.5882352941176, Blast_Score=110, Evalue=1e-24, Organism=Drosophila melanogaster, GI281362877, Length=195, Percent_Identity=31.2820512820513, Blast_Score=107, Evalue=1e-23, Organism=Drosophila melanogaster, GI24651407, Length=187, Percent_Identity=31.0160427807487, Blast_Score=100, Evalue=1e-21, Organism=Drosophila melanogaster, GI24651424, Length=186, Percent_Identity=31.1827956989247, Blast_Score=94, Evalue=9e-20, Organism=Drosophila melanogaster, GI221460681, Length=191, Percent_Identity=31.9371727748691, Blast_Score=94, Evalue=2e-19, Organism=Drosophila melanogaster, GI116008432, Length=188, Percent_Identity=31.9148936170213, Blast_Score=93, Evalue=2e-19, Organism=Drosophila melanogaster, GI116008128, Length=188, Percent_Identity=31.9148936170213, Blast_Score=93, Evalue=2e-19, Organism=Drosophila melanogaster, GI24651418, Length=193, Percent_Identity=32.1243523316062, Blast_Score=92, Evalue=4e-19, Organism=Drosophila melanogaster, GI21358233, Length=222, Percent_Identity=29.2792792792793, Blast_Score=91, Evalue=8e-19, Organism=Drosophila melanogaster, GI281361323, Length=188, Percent_Identity=29.2553191489362, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI221512818, Length=124, Percent_Identity=34.6774193548387, Blast_Score=81, Evalue=7e-16, Organism=Drosophila melanogaster, GI45550650, Length=128, Percent_Identity=31.25, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI116008130, Length=187, Percent_Identity=26.7379679144385, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI116008537, Length=187, Percent_Identity=26.7379679144385, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI24651420, Length=111, Percent_Identity=39.6396396396396, Blast_Score=78, Evalue=6e-15, Organism=Drosophila melanogaster, GI78706702, Length=188, Percent_Identity=28.7234042553192, Blast_Score=78, Evalue=7e-15, Organism=Drosophila melanogaster, GI24651430, Length=188, Percent_Identity=26.5957446808511, Blast_Score=75, Evalue=7e-14, Organism=Drosophila melanogaster, GI116008434, Length=187, Percent_Identity=26.2032085561497, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24651416, Length=186, Percent_Identity=29.5698924731183, Blast_Score=72, Evalue=6e-13, Organism=Drosophila melanogaster, GI21358309, Length=186, Percent_Identity=29.5698924731183, Blast_Score=71, Evalue=7e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31196; Mature: 31065
Theoretical pI: Translated: 6.14; Mature: 6.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNTSIPADLGDWIIAQAIAGHPPEHTLQPLLEAGWSEQDAIDAVEALVRAHVQAHAQAH CCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHC GLPVPVPVRVPAPLQADASSLLDLGDRQVQVLVSLMLPRVVVLGGLLADDECDALIALAR CCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHC PQLARSRTVDNRDGSEIVHAARTSHSMALQPGQDALCQRIEARIAQLLEWPVEHGEGLQV CHHHHHCCCCCCCCHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCEE LRYATGAQYAPHYDYFEPDAPGTPVLLQHGGQRVASLVMYLNTPERGGATRFPDVHLDVA EHHHCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEE AVKGNAVFFSYDRPHPMTRTLHAGAPVLAGEKWVATKWLRERPLHAPT EEECCEEEEECCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCC >Mature Secondary Structure TNTSIPADLGDWIIAQAIAGHPPEHTLQPLLEAGWSEQDAIDAVEALVRAHVQAHAQAH CCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHC GLPVPVPVRVPAPLQADASSLLDLGDRQVQVLVSLMLPRVVVLGGLLADDECDALIALAR CCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHC PQLARSRTVDNRDGSEIVHAARTSHSMALQPGQDALCQRIEARIAQLLEWPVEHGEGLQV CHHHHHCCCCCCCCHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCEE LRYATGAQYAPHYDYFEPDAPGTPVLLQHGGQRVASLVMYLNTPERGGATRFPDVHLDVA EHHHCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEE AVKGNAVFFSYDRPHPMTRTLHAGAPVLAGEKWVATKWLRERPLHAPT EEECCEEEEECCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA