| Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
|---|---|
| Accession | NC_007005 |
| Length | 6,093,698 |
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The map label for this gene is phnL [H]
Identifier: 66045496
GI number: 66045496
Start: 2620918
End: 2621634
Strand: Direct
Name: phnL [H]
Synonym: Psyr_2256
Alternate gene names: 66045496
Gene position: 2620918-2621634 (Clockwise)
Preceding gene: 66045495
Following gene: 66045497
Centisome position: 43.01
GC content: 64.85
Gene sequence:
>717_bases ATGACAACGTTGATCGAGGTCCGTGACCTGTCGAAAACCTTCACCCTGCATCAGCACAACGGTGTAGTCCTCAATGTACT GCGCGGCCTGAATTTCTCGGTGCGCGCCGGCGAATGCCTGGTGCTCAGCGGGCAATCCGGCGCGGGCAAAAGCACGCTGC TGCGCACCCTGTACGGCAATTACCTGCCTGCCGCCGGCAGCATTCGCGTGCAGCATGAAGGCGAGTGGACCGAACTGGTC GGCGCAACCCCGCGCCAGGTGCTTGAGGTGCGACGCAAGACGCTCGGCTACGTCAGCCAGTTCCTGCGCGTGATCCCGCG TGTGTCCAGCCTGGACGTGGTCATGGAACCGGCCCTGGCGCGCGGCTGGTCCCGTGAGCAGGCGCAGGAGCGCGCGCAAC TGCTGCTGGGGCGGCTGAACATTCCGCAGCGTTTGTGGCCGCTGGCGCCCAGTACGTTTTCCGGTGGCGAACAGCAGCGC ATCAACATCGCGCGCGCATTCATGGTGCCATGGCCGGTGCTGTTGCTCGACGAACCGACTGCGTCGCTGGACGACGCCAA CCGCCGGGTGGTGCTGGAGCTGGTCGACGAGGCCAAACAGGCCGGTGCCGCGCTGATCGGTATTTTCCATGACCGCGATG CCCGCGAGGCAGTCGCCAATCGTCAACTCGACATGACCCCGGTGGACCTCACCGCCAAGGAGTTGCTGCAATGCTGA
Upstream 100 bases:
>100_bases TCGATGACCCGCAGCACCCGTATTCGCAACTGCTGGTGTCCTCGGTATTGCAGCCATGAGCCGCACTGTCCGAACAGCCT GTACAGAAGAGGTGAGCCCG
Downstream 100 bases:
>100_bases ACGAACAGGTTTTCAGTAACGCCCGCGTGGTGACGGCCGAGCAGGTATTCACCGGCACTGTGGTGGTCCGTGACGGCCTG ATTGCCGAGGTCGAGAGTGG
Product: ABC transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 238; Mature: 237
Protein sequence:
>238_residues MTTLIEVRDLSKTFTLHQHNGVVLNVLRGLNFSVRAGECLVLSGQSGAGKSTLLRTLYGNYLPAAGSIRVQHEGEWTELV GATPRQVLEVRRKTLGYVSQFLRVIPRVSSLDVVMEPALARGWSREQAQERAQLLLGRLNIPQRLWPLAPSTFSGGEQQR INIARAFMVPWPVLLLDEPTASLDDANRRVVLELVDEAKQAGAALIGIFHDRDAREAVANRQLDMTPVDLTAKELLQC
Sequences:
>Translated_238_residues MTTLIEVRDLSKTFTLHQHNGVVLNVLRGLNFSVRAGECLVLSGQSGAGKSTLLRTLYGNYLPAAGSIRVQHEGEWTELV GATPRQVLEVRRKTLGYVSQFLRVIPRVSSLDVVMEPALARGWSREQAQERAQLLLGRLNIPQRLWPLAPSTFSGGEQQR INIARAFMVPWPVLLLDEPTASLDDANRRVVLELVDEAKQAGAALIGIFHDRDAREAVANRQLDMTPVDLTAKELLQC >Mature_237_residues TTLIEVRDLSKTFTLHQHNGVVLNVLRGLNFSVRAGECLVLSGQSGAGKSTLLRTLYGNYLPAAGSIRVQHEGEWTELVG ATPRQVLEVRRKTLGYVSQFLRVIPRVSSLDVVMEPALARGWSREQAQERAQLLLGRLNIPQRLWPLAPSTFSGGEQQRI NIARAFMVPWPVLLLDEPTASLDDANRRVVLELVDEAKQAGAALIGIFHDRDAREAVANRQLDMTPVDLTAKELLQC
Specific function: Part of the binding-protein-dependent transport system for alkylphosphonates. Probably responsible for energy coupling to the transport system [H]
COG id: COG4778
COG function: function code P; ABC-type phosphonate transport system, ATPase component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI116734710, Length=234, Percent_Identity=26.0683760683761, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI27881501, Length=228, Percent_Identity=27.1929824561404, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI30795238, Length=228, Percent_Identity=27.1929824561404, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI42741659, Length=224, Percent_Identity=28.5714285714286, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI9961250, Length=197, Percent_Identity=27.9187817258883, Blast_Score=68, Evalue=6e-12, Organism=Homo sapiens, GI4505771, Length=197, Percent_Identity=27.9187817258883, Blast_Score=68, Evalue=6e-12, Organism=Homo sapiens, GI9961252, Length=197, Percent_Identity=27.9187817258883, Blast_Score=68, Evalue=9e-12, Organism=Homo sapiens, GI153792144, Length=197, Percent_Identity=27.9187817258883, Blast_Score=68, Evalue=9e-12, Organism=Homo sapiens, GI105990541, Length=220, Percent_Identity=26.3636363636364, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI21536376, Length=193, Percent_Identity=25.3886010362694, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI27436953, Length=222, Percent_Identity=26.1261261261261, Blast_Score=64, Evalue=8e-11, Organism=Homo sapiens, GI150417984, Length=217, Percent_Identity=28.110599078341, Blast_Score=64, Evalue=8e-11, Organism=Escherichia coli, GI1790534, Length=218, Percent_Identity=60.5504587155963, Blast_Score=273, Evalue=5e-75, Organism=Escherichia coli, GI1786703, Length=210, Percent_Identity=36.6666666666667, Blast_Score=104, Evalue=6e-24, Organism=Escherichia coli, GI1787105, Length=211, Percent_Identity=31.2796208530806, Blast_Score=102, Evalue=2e-23, Organism=Escherichia coli, GI1787029, Length=219, Percent_Identity=33.3333333333333, Blast_Score=100, Evalue=7e-23, Organism=Escherichia coli, GI1788225, Length=222, Percent_Identity=31.5315315315315, Blast_Score=98, Evalue=4e-22, Organism=Escherichia coli, GI87081834, Length=231, Percent_Identity=32.4675324675325, Blast_Score=98, Evalue=5e-22, Organism=Escherichia coli, GI1790544, Length=229, Percent_Identity=34.061135371179, Blast_Score=95, Evalue=5e-21, Organism=Escherichia coli, GI1787089, Length=193, Percent_Identity=34.1968911917098, Blast_Score=91, Evalue=5e-20, Organism=Escherichia coli, GI1789672, Length=204, Percent_Identity=30.8823529411765, Blast_Score=91, Evalue=6e-20, Organism=Escherichia coli, GI1789962, Length=229, Percent_Identity=30.1310043668122, Blast_Score=90, Evalue=1e-19, Organism=Escherichia coli, GI1789873, Length=188, Percent_Identity=34.0425531914894, Blast_Score=89, Evalue=2e-19, Organism=Escherichia coli, GI1788644, Length=217, Percent_Identity=33.6405529953917, Blast_Score=85, Evalue=4e-18, Organism=Escherichia coli, GI48995001, Length=202, Percent_Identity=31.1881188118812, Blast_Score=85, Evalue=5e-18, Organism=Escherichia coli, GI1786398, Length=219, Percent_Identity=28.7671232876712, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI48994883, Length=233, Percent_Identity=29.1845493562232, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1786698, Length=191, Percent_Identity=31.413612565445, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI1788450, Length=214, Percent_Identity=31.3084112149533, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI1787500, Length=235, Percent_Identity=27.2340425531915, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI87081791, Length=227, Percent_Identity=29.9559471365639, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1789991, Length=227, Percent_Identity=25.5506607929515, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1788506, Length=236, Percent_Identity=30.0847457627119, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1789891, Length=218, Percent_Identity=29.8165137614679, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1789032, Length=240, Percent_Identity=25.8333333333333, Blast_Score=71, Evalue=5e-14, Organism=Escherichia coli, GI1787712, Length=225, Percent_Identity=28, Blast_Score=71, Evalue=6e-14, Organism=Escherichia coli, GI1787758, Length=225, Percent_Identity=27.5555555555556, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1786872, Length=185, Percent_Identity=31.3513513513514, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI1787041, Length=228, Percent_Identity=28.5087719298246, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI145693107, Length=229, Percent_Identity=30.1310043668122, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1786319, Length=210, Percent_Identity=29.5238095238095, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI87081709, Length=225, Percent_Identity=27.5555555555556, Blast_Score=68, Evalue=6e-13, Organism=Escherichia coli, GI1786253, Length=195, Percent_Identity=27.6923076923077, Blast_Score=68, Evalue=6e-13, Organism=Escherichia coli, GI1787547, Length=212, Percent_Identity=29.7169811320755, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1790190, Length=219, Percent_Identity=27.3972602739726, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI48994997, Length=201, Percent_Identity=31.3432835820896, Blast_Score=65, Evalue=3e-12, Organism=Escherichia coli, GI1788761, Length=234, Percent_Identity=27.7777777777778, Blast_Score=65, Evalue=3e-12, Organism=Escherichia coli, GI1788472, Length=211, Percent_Identity=27.0142180094787, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1790467, Length=197, Percent_Identity=28.4263959390863, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1787164, Length=210, Percent_Identity=31.4285714285714, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1787792, Length=207, Percent_Identity=29.4685990338164, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1787143, Length=210, Percent_Identity=28.5714285714286, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI87082268, Length=209, Percent_Identity=29.6650717703349, Blast_Score=61, Evalue=5e-11, Organism=Escherichia coli, GI1787112, Length=187, Percent_Identity=28.8770053475936, Blast_Score=60, Evalue=9e-11, Organism=Caenorhabditis elegans, GI115533608, Length=218, Percent_Identity=28.4403669724771, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17565586, Length=198, Percent_Identity=26.2626262626263, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17569143, Length=187, Percent_Identity=29.9465240641711, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI71983523, Length=219, Percent_Identity=27.8538812785388, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI71983510, Length=219, Percent_Identity=27.8538812785388, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI71983516, Length=219, Percent_Identity=27.8538812785388, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17541710, Length=200, Percent_Identity=32, Blast_Score=67, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17569145, Length=187, Percent_Identity=30.4812834224599, Blast_Score=66, Evalue=1e-11, Organism=Caenorhabditis elegans, GI25146777, Length=197, Percent_Identity=30.4568527918782, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17510237, Length=221, Percent_Identity=24.8868778280543, Blast_Score=64, Evalue=7e-11, Organism=Saccharomyces cerevisiae, GI6322640, Length=188, Percent_Identity=29.7872340425532, Blast_Score=65, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6323217, Length=193, Percent_Identity=29.0155440414508, Blast_Score=62, Evalue=7e-11, Organism=Drosophila melanogaster, GI24666092, Length=217, Percent_Identity=28.110599078341, Blast_Score=82, Evalue=4e-16, Organism=Drosophila melanogaster, GI19920532, Length=213, Percent_Identity=29.1079812206573, Blast_Score=71, Evalue=7e-13, Organism=Drosophila melanogaster, GI24580930, Length=213, Percent_Identity=29.1079812206573, Blast_Score=71, Evalue=7e-13, Organism=Drosophila melanogaster, GI24648314, Length=218, Percent_Identity=25.6880733944954, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI281363262, Length=195, Percent_Identity=30.2564102564103, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24653245, Length=195, Percent_Identity=30.2564102564103, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24650853, Length=217, Percent_Identity=29.9539170506912, Blast_Score=68, Evalue=4e-12, Organism=Drosophila melanogaster, GI24650855, Length=217, Percent_Identity=29.9539170506912, Blast_Score=68, Evalue=4e-12, Organism=Drosophila melanogaster, GI281362751, Length=217, Percent_Identity=29.9539170506912, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI28574150, Length=230, Percent_Identity=24.7826086956522, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI116007328, Length=230, Percent_Identity=24.7826086956522, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI85725262, Length=189, Percent_Identity=29.1005291005291, Blast_Score=65, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR012701 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 26382; Mature: 26251
Theoretical pI: Translated: 8.74; Mature: 8.74
Prosite motif: PS00675 SIGMA54_INTERACT_1 ; PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTLIEVRDLSKTFTLHQHNGVVLNVLRGLNFSVRAGECLVLSGQSGAGKSTLLRTLYGN CCCEEEEHHCHHHEEEECCCCHHEEHHHCCCCEEECCCEEEEECCCCCCHHHHHHHHHHC YLPAAGSIRVQHEGEWTELVGATPRQVLEVRRKTLGYVSQFLRVIPRVSSLDVVMEPALA CCCCCCCEEEEECCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCHHHH RGWSREQAQERAQLLLGRLNIPQRLWPLAPSTFSGGEQQRINIARAFMVPWPVLLLDEPT CCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCC ASLDDANRRVVLELVDEAKQAGAALIGIFHDRDAREAVANRQLDMTPVDLTAKELLQC CCCCCCCCHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHCCCCCCCCCCCCHHHHHCC >Mature Secondary Structure TTLIEVRDLSKTFTLHQHNGVVLNVLRGLNFSVRAGECLVLSGQSGAGKSTLLRTLYGN CCEEEEHHCHHHEEEECCCCHHEEHHHCCCCEEECCCEEEEECCCCCCHHHHHHHHHHC YLPAAGSIRVQHEGEWTELVGATPRQVLEVRRKTLGYVSQFLRVIPRVSSLDVVMEPALA CCCCCCCEEEEECCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCHHHH RGWSREQAQERAQLLLGRLNIPQRLWPLAPSTFSGGEQQRINIARAFMVPWPVLLLDEPT CCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCC ASLDDANRRVVLELVDEAKQAGAALIGIFHDRDAREAVANRQLDMTPVDLTAKELLQC CCCCCCCCHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHCCCCCCCCCCCCHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2155230; 1840580; 7610040; 9278503 [H]