| Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
|---|---|
| Accession | NC_007005 |
| Length | 6,093,698 |
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The map label for this gene is phnJ [H]
Identifier: 66045494
GI number: 66045494
Start: 2619171
End: 2620058
Strand: Direct
Name: phnJ [H]
Synonym: Psyr_2254
Alternate gene names: 66045494
Gene position: 2619171-2620058 (Clockwise)
Preceding gene: 66045493
Following gene: 66045495
Centisome position: 42.98
GC content: 61.15
Gene sequence:
>888_bases ATGACTCATGCACCGATGAACACCGCACAGCAAAGGCCTGCACGGGACGAGGCCTACAACTTCGCTTATCTGGACGAGCA GACCAAACGCATGATTCGCCGCGCCTTGCTCAAGGCGGTGGCGATCCCCGGTTATCAGGTGCCGTTCGGCGGCCGCGAAA TGCCGCTGCCGTATGGCTGGGGCACCGGCGGGATGCAACTGACCGCGGCGATCCTGGGCGCCGATGATGTGCTCAAGGTC ATCGACCAGGGCGCTGACGACACCACCAACGCGGTCTCGATCAGGCGTTTCTTTGCCCGCACGGCCGGCATCGCCACCAC CGAGCGCACGCCTGAGGCGACGGTCATCCAGACCCGTCACCGGATCCCGGAAACACCGCTGCACGCCGATCAGATCATGG TCTATCAGGTGCCGATTCCCGAACCGCTGCGTTTCATCGAGCCCTCGGAAACCGAGACCCGGACCATGCACGCGCTGGAT GATTACGGCGTCATGCACGTCAAACTCTACGAGGACATCGCCACTTTCGGCCATATCGCCACCAGTTACGCTTATCCAGT GATGGTCGATGAACGCTATGTGATGGACCCGTCGCCGATTCCCAAATTCGATAACCCCAAGCTGCACATGAGCCCGGCAC TGATGCTGTTCGGCGCGGGGCGCGAAAAGCGTCTGTACGCCGTGCCGCCGTATACGCAGGTGGTGAGCCTGGACTTTGAA GATCACCCGTTCGAGGTGCAGCGCTGGGAGCAGTGCTGTGCGATCTGTGGCAGCCATGATTCCTTTCTCGACGAGCTGAT TCTCGACGATGCCGGGACGCAGAGCTTTGTCTGTTCCGACACCGATTACTGCGCCCAGCGCGTCAAACAGCAGGAGAACG ACCGATGA
Upstream 100 bases:
>100_bases TCGTCTCGCACCTCAAGCTGCCGCATTACGTGGACTTCCAGTCCGAACTGGAGCTGATTCGCAAGCTGCGCACGTCTGCA CCGAAACCGGGGAGCGACCA
Downstream 100 bases:
>100_bases TCAGTGCACGTTCACTGGACCCGGCGGGCGAGCGCCTTCCCGAGGCTGTGCAGCCGCTGCTCAAGGTACGCGGCCTGACC CGTCTGTACGGTGTGCAGAA
Product: phosphonate metabolism PhnJ
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 295; Mature: 294
Protein sequence:
>295_residues MTHAPMNTAQQRPARDEAYNFAYLDEQTKRMIRRALLKAVAIPGYQVPFGGREMPLPYGWGTGGMQLTAAILGADDVLKV IDQGADDTTNAVSIRRFFARTAGIATTERTPEATVIQTRHRIPETPLHADQIMVYQVPIPEPLRFIEPSETETRTMHALD DYGVMHVKLYEDIATFGHIATSYAYPVMVDERYVMDPSPIPKFDNPKLHMSPALMLFGAGREKRLYAVPPYTQVVSLDFE DHPFEVQRWEQCCAICGSHDSFLDELILDDAGTQSFVCSDTDYCAQRVKQQENDR
Sequences:
>Translated_295_residues MTHAPMNTAQQRPARDEAYNFAYLDEQTKRMIRRALLKAVAIPGYQVPFGGREMPLPYGWGTGGMQLTAAILGADDVLKV IDQGADDTTNAVSIRRFFARTAGIATTERTPEATVIQTRHRIPETPLHADQIMVYQVPIPEPLRFIEPSETETRTMHALD DYGVMHVKLYEDIATFGHIATSYAYPVMVDERYVMDPSPIPKFDNPKLHMSPALMLFGAGREKRLYAVPPYTQVVSLDFE DHPFEVQRWEQCCAICGSHDSFLDELILDDAGTQSFVCSDTDYCAQRVKQQENDR >Mature_294_residues THAPMNTAQQRPARDEAYNFAYLDEQTKRMIRRALLKAVAIPGYQVPFGGREMPLPYGWGTGGMQLTAAILGADDVLKVI DQGADDTTNAVSIRRFFARTAGIATTERTPEATVIQTRHRIPETPLHADQIMVYQVPIPEPLRFIEPSETETRTMHALDD YGVMHVKLYEDIATFGHIATSYAYPVMVDERYVMDPSPIPKFDNPKLHMSPALMLFGAGREKRLYAVPPYTQVVSLDFED HPFEVQRWEQCCAICGSHDSFLDELILDDAGTQSFVCSDTDYCAQRVKQQENDR
Specific function: Belongs to an operon involved in alkylphosphonate uptake and C-P lyase. Exact function not known [H]
COG id: COG3627
COG function: function code P; Uncharacterized enzyme of phosphonate metabolism
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phnJ family [H]
Homologues:
Organism=Escherichia coli, GI1790536, Length=274, Percent_Identity=78.8321167883212, Blast_Score=466, Evalue=1e-133,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010306 [H]
Pfam domain/function: PF06007 PhnJ [H]
EC number: NA
Molecular weight: Translated: 33322; Mature: 33191
Theoretical pI: Translated: 4.94; Mature: 4.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTHAPMNTAQQRPARDEAYNFAYLDEQTKRMIRRALLKAVAIPGYQVPFGGREMPLPYGW CCCCCCCHHHCCCCCHHHCCEEEECHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCC GTGGMQLTAAILGADDVLKVIDQGADDTTNAVSIRRFFARTAGIATTERTPEATVIQTRH CCCCCEEHHHHHCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH RIPETPLHADQIMVYQVPIPEPLRFIEPSETETRTMHALDDYGVMHVKLYEDIATFGHIA CCCCCCCCCCEEEEEECCCCCCHHCCCCCCCHHHHHHHHHCCCEEEEEHHHHHHHHHHHH TSYAYPVMVDERYVMDPSPIPKFDNPKLHMSPALMLFGAGREKRLYAVPPYTQVVSLDFE HHCCCEEEECCEEEECCCCCCCCCCCCEECCCEEEEEECCCCCEEEECCCCCEEEEECCC DHPFEVQRWEQCCAICGSHDSFLDELILDDAGTQSFVCSDTDYCAQRVKQQENDR CCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHCCC >Mature Secondary Structure THAPMNTAQQRPARDEAYNFAYLDEQTKRMIRRALLKAVAIPGYQVPFGGREMPLPYGW CCCCCCHHHCCCCCHHHCCEEEECHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCC GTGGMQLTAAILGADDVLKVIDQGADDTTNAVSIRRFFARTAGIATTERTPEATVIQTRH CCCCCEEHHHHHCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH RIPETPLHADQIMVYQVPIPEPLRFIEPSETETRTMHALDDYGVMHVKLYEDIATFGHIA CCCCCCCCCCEEEEEECCCCCCHHCCCCCCCHHHHHHHHHCCCEEEEEHHHHHHHHHHHH TSYAYPVMVDERYVMDPSPIPKFDNPKLHMSPALMLFGAGREKRLYAVPPYTQVVSLDFE HHCCCEEEECCEEEECCCCCCCCCCCCEECCCEEEEEECCCCCEEEECCCCCEEEEECCC DHPFEVQRWEQCCAICGSHDSFLDELILDDAGTQSFVCSDTDYCAQRVKQQENDR CCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2155230; 1840580; 7610040; 9278503 [H]