| Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
|---|---|
| Accession | NC_007005 |
| Length | 6,093,698 |
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The map label for this gene is yobB [C]
Identifier: 66045471
GI number: 66045471
Start: 2594315
End: 2595064
Strand: Direct
Name: yobB [C]
Synonym: Psyr_2231
Alternate gene names: 66045471
Gene position: 2594315-2595064 (Clockwise)
Preceding gene: 66045459
Following gene: 66045475
Centisome position: 42.57
GC content: 63.33
Gene sequence:
>750_bases ATGACGTTTCCAATACTCGCCGCTGCTCAATTCTGTTCTGCACGGGGAGATATCGAAAGCAATCTCTCCGGGCATCTGGC GTTCATGCAGCGGGCAGCTGAACTGGGCGCCCGTTATCTGCTGTTTCCCGAGTTGTCACTCACAGGCTACGAGCCGGATC TGGCTCGCGAGTTGGCTTTGCTTCCAGACGATGCGCGTCTGGCGCCGCTCGTGGCACTGGCTAAAAAATTGCGACTGACG ACCACCCTTGGCGTGCCGCTCAGGGGGCCGGACGACAGCGTGCTGATTGGCGCACTGACCTTCACCGCTCGGGGCGATGT CATCGCCTACGCCAAGCAATATCTGCATCCCGGCGAAGACGTCGTGTTCAGCGCCGGCAACGAGGACTGCTATCTGCCAG TTGATCAGCAGCGAATCGGTCTGTGCGTGTGTGCCGACTTCGCCCACGCCGAACACGCGCAGCGCATGGCGCAAGGCGCA GCCTGGGTGTACGCAGCCAGTGTGCTGATCTCGCCGGGAGGCTATGAATACGATGCCGGACTGCTTTCGGGGCATGCCCG CCGTCACTCGCTGCCGGTGTTGATAGCCAATCATGGCGGGCCGACCGGCGGCTGGCAGTCGGCGGGGCGCAGTGGTCTGT GGGACGAGGCAGGGCGCTGGGTTGGCGGGATGCAAGGTGAAGGAGGTGGTCTGGTAGTCGCAACCCGCCAGCGCGAGGGC TGGCGGGTGAGGGCGGTTACGGTGGACTAA
Upstream 100 bases:
>100_bases GTCGTACAACATGGGTCGTTGGTAAAAATGTAACTATGTGTGAACCGGCTGTGATGCAGGCTAAGCTCGCGTCTGCCAAC CCCGTTTATCTGGAGAGCCC
Downstream 100 bases:
>100_bases GGGTGGTCACGCGCCCACGGCATTGTCCGCTTTGAGCTCGGGCTCATTATGCGAGCGCGAAAGGGTCTCCGGCACGGCCA GCCACAACAGGCAGAACGCT
Product: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
Products: NA
Alternate protein names: Carbon-Nitrogen Hydrolase; Carbon-Nitrogen Family Hydrolase; Carbon-Nitrogen Hydrolase Family Protein; Hydrolase; Carbon-Nitrogen Hydrolase Protein; Hydrolase Carbon-Nitrogen Family
Number of amino acids: Translated: 249; Mature: 248
Protein sequence:
>249_residues MTFPILAAAQFCSARGDIESNLSGHLAFMQRAAELGARYLLFPELSLTGYEPDLARELALLPDDARLAPLVALAKKLRLT TTLGVPLRGPDDSVLIGALTFTARGDVIAYAKQYLHPGEDVVFSAGNEDCYLPVDQQRIGLCVCADFAHAEHAQRMAQGA AWVYAASVLISPGGYEYDAGLLSGHARRHSLPVLIANHGGPTGGWQSAGRSGLWDEAGRWVGGMQGEGGGLVVATRQREG WRVRAVTVD
Sequences:
>Translated_249_residues MTFPILAAAQFCSARGDIESNLSGHLAFMQRAAELGARYLLFPELSLTGYEPDLARELALLPDDARLAPLVALAKKLRLT TTLGVPLRGPDDSVLIGALTFTARGDVIAYAKQYLHPGEDVVFSAGNEDCYLPVDQQRIGLCVCADFAHAEHAQRMAQGA AWVYAASVLISPGGYEYDAGLLSGHARRHSLPVLIANHGGPTGGWQSAGRSGLWDEAGRWVGGMQGEGGGLVVATRQREG WRVRAVTVD >Mature_248_residues TFPILAAAQFCSARGDIESNLSGHLAFMQRAAELGARYLLFPELSLTGYEPDLARELALLPDDARLAPLVALAKKLRLTT TLGVPLRGPDDSVLIGALTFTARGDVIAYAKQYLHPGEDVVFSAGNEDCYLPVDQQRIGLCVCADFAHAEHAQRMAQGAA WVYAASVLISPGGYEYDAGLLSGHARRHSLPVLIANHGGPTGGWQSAGRSGLWDEAGRWVGGMQGEGGGLVVATRQREGW RVRAVTVD
Specific function: Unknown
COG id: COG0388
COG function: function code R; Predicted amidohydrolase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26568; Mature: 26437
Theoretical pI: Translated: 6.15; Mature: 6.15
Prosite motif: PS50263 CN_HYDROLASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTFPILAAAQFCSARGDIESNLSGHLAFMQRAAELGARYLLFPELSLTGYEPDLARELAL CCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHC LPDDARLAPLVALAKKLRLTTTLGVPLRGPDDSVLIGALTFTARGDVIAYAKQYLHPGED CCCCCHHHHHHHHHHHHHEEEEECCCCCCCCCCEEEEEEEEECCCCHHHHHHHHCCCCCC VVFSAGNEDCYLPVDQQRIGLCVCADFAHAEHAQRMAQGAAWVYAASVLISPGGYEYDAG EEEECCCCCEEECCCCCCCCEEEEECHHHHHHHHHHHHCCHHEEEEEEEECCCCCEECCH LLSGHARRHSLPVLIANHGGPTGGWQSAGRSGLWDEAGRWVGGMQGEGGGLVVATRQREG HHCCCCHHCCCCEEEECCCCCCCCHHHCCCCCCCHHHCCCCCCCCCCCCEEEEEEECCCC WRVRAVTVD EEEEEEEEC >Mature Secondary Structure TFPILAAAQFCSARGDIESNLSGHLAFMQRAAELGARYLLFPELSLTGYEPDLARELAL CCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHC LPDDARLAPLVALAKKLRLTTTLGVPLRGPDDSVLIGALTFTARGDVIAYAKQYLHPGED CCCCCHHHHHHHHHHHHHEEEEECCCCCCCCCCEEEEEEEEECCCCHHHHHHHHCCCCCC VVFSAGNEDCYLPVDQQRIGLCVCADFAHAEHAQRMAQGAAWVYAASVLISPGGYEYDAG EEEECCCCCEEECCCCCCCCEEEEECHHHHHHHHHHHHCCHHEEEEEEEECCCCCEECCH LLSGHARRHSLPVLIANHGGPTGGWQSAGRSGLWDEAGRWVGGMQGEGGGLVVATRQREG HHCCCCHHCCCCEEEECCCCCCCCHHHCCCCCCCHHHCCCCCCCCCCCCEEEEEEECCCC WRVRAVTVD EEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA