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The map label for this gene is rbsD [H]

Identifier: 66045396

GI number: 66045396

Start: 2512184

End: 2512588

Strand: Direct

Name: rbsD [H]

Synonym: Psyr_2156

Alternate gene names: 66045396

Gene position: 2512184-2512588 (Clockwise)

Preceding gene: 66045395

Following gene: 66045397

Centisome position: 41.23

GC content: 56.3

Gene sequence:

>405_bases
ATGAAAAAGACCCCGCTACTCAATATTGCCCTGTCCCGCGTGATTGCATCGCTGGGTCACGGTGACATCCTGATGATCGT
CGACGCCGGCATGCCAGTACCGGCAGGCGTCGAACTGATCGACCTCGCGCTGACCCGCGGTGTGCCGGATTTCATCAGTG
TGCTGGATGTCGTGCTGAGTGAAATGCAGGTTGAAAGCCACGTACTGGCCAATGAGATGGCCGAGGTCAAACCGCCTGCG
TTGCAGGTGATCGAAAGCCTGAATCTCGAAGACCAGTTGGGGCAACAACGCTGGATTAGCCACGAAGACCTCAAGGTCCT
GAGTCGCAAGGCCAAGGCAATCATCCGTACCGGAGAATGTCAGCCGTACAGTAATGTGGCGCTGGTATCCGGAGTCGTCT
TCTAA

Upstream 100 bases:

>100_bases
CAATTCGTTTCGGTCAGGCTGCGGCGGCCATCTCCGTTACCCGAGCAGGTGCCCAGCCGTCCATCCCGACGTTCGAGGAA
GTACAGGAATTCAATTCGCT

Downstream 100 bases:

>100_bases
TAATTCAATAAAGGGAGTTTCATATGACATTGATACAGTTTTCCAGACAGTTCATTCGTGGAGCGTTGCTCTTGTCCATT
CTCGGTACTGCTGCTGTCCA

Product: D-ribose pyranase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 134; Mature: 134

Protein sequence:

>134_residues
MKKTPLLNIALSRVIASLGHGDILMIVDAGMPVPAGVELIDLALTRGVPDFISVLDVVLSEMQVESHVLANEMAEVKPPA
LQVIESLNLEDQLGQQRWISHEDLKVLSRKAKAIIRTGECQPYSNVALVSGVVF

Sequences:

>Translated_134_residues
MKKTPLLNIALSRVIASLGHGDILMIVDAGMPVPAGVELIDLALTRGVPDFISVLDVVLSEMQVESHVLANEMAEVKPPA
LQVIESLNLEDQLGQQRWISHEDLKVLSRKAKAIIRTGECQPYSNVALVSGVVF
>Mature_134_residues
MKKTPLLNIALSRVIASLGHGDILMIVDAGMPVPAGVELIDLALTRGVPDFISVLDVVLSEMQVESHVLANEMAEVKPPA
LQVIESLNLEDQLGQQRWISHEDLKVLSRKAKAIIRTGECQPYSNVALVSGVVF

Specific function: Catalyzes the interconversion of beta-pyran and beta- furan forms of D-ribose [H]

COG id: COG1869

COG function: function code G; ABC-type ribose transport system, auxiliary component

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbsD / fucU family. RbsD subfamily [H]

Homologues:

Organism=Escherichia coli, GI87082327, Length=142, Percent_Identity=42.9577464788732, Blast_Score=120, Evalue=2e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023064
- InterPro:   IPR007721 [H]

Pfam domain/function: PF05025 RbsD_FucU [H]

EC number: NA

Molecular weight: Translated: 14521; Mature: 14521

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTPLLNIALSRVIASLGHGDILMIVDAGMPVPAGVELIDLALTRGVPDFISVLDVVLS
CCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHH
EMQVESHVLANEMAEVKPPALQVIESLNLEDQLGQQRWISHEDLKVLSRKAKAIIRTGEC
HHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
QPYSNVALVSGVVF
CCCCCHHHHHCCCC
>Mature Secondary Structure
MKKTPLLNIALSRVIASLGHGDILMIVDAGMPVPAGVELIDLALTRGVPDFISVLDVVLS
CCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHH
EMQVESHVLANEMAEVKPPALQVIESLNLEDQLGQQRWISHEDLKVLSRKAKAIIRTGEC
HHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
QPYSNVALVSGVVF
CCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA