Click here to switch to the map view.

The map label for this gene is ybgK [H]

Identifier: 66043766

GI number: 66043766

Start: 540894

End: 542498

Strand: Direct

Name: ybgK [H]

Synonym: Psyr_0499

Alternate gene names: 66043766

Gene position: 540894-542498 (Clockwise)

Preceding gene: 66043765

Following gene: 66043767

Centisome position: 8.88

GC content: 64.8

Gene sequence:

>1605_bases
ATGCGTTTCTACCCGGCCAACCTGGATGCACTCCTGGTTGAACTGTCGAATCTGGACGAGACCCTGGCCCTGTTCGAATC
GTTACAGCAGATGCCCATCGCTGGCGTGGAGGAAATCGTCCCGGCCGCCCGAACGTTGCTGGTGCATTTTCGTCCGTCAG
CCATCGGTTTCGAAGCACTGGCCACACAGATCGCCTCGCGCGACATTCGTGGCAAGGCGCGCGAGGCGGGCAAGCTGATC
GAAATACCGGTGCATTACAACGGTGAAGACCTGGCCGATGTCGCCCGCGAGCTGGACATCAGCGTCGAGGAAGTCATCAA
GCGCCACACCAGCAGCGACTACAACGTTGCGTTCTGCGGCTTTGCGCCCGGTTTTGCCTACCTCAGCGGCGGCGCCGGGT
TCGTGGTGCCACGGCGCAGCACGCCGCGCACGCGTATTCCGGCTGGCGCAGTGGCACTGGCCGGTGGTTTCAGTGGTATT
TACCCACAGGCCAGCCCCGGCGGCTGGCAGATCATCGGGGTGACCACCTCAACCATGTGGGACCTGGGCCGCGACGAGCC
CGCCTTGCTCCAGCCCGGCTACCGCGTGCGTTTCCAGGATGCCGGTCCGCTCCCGGAGACTCGTGTGCAGGTTGCCGCAC
CTGTCCGGCCGCAGGCGACGACGGTCAGCGAAGACTATCTGCAGATCGAGACGCCAGGTCTGCAGACCCTGTTTCAGGAC
CTGGGGCGTCCCGGTCGCGCGGGGCAGGGTGTTTCCGCATCGGGCGCGCTGGATCGCGGCGCCTTGCGCGCTGCCAACCG
CGCGGTGGGTAACGATCCGGCGACGGCGTGCCTGGAAATTCTCATGGGCGGCCTGACCTTCACCTGTCAGGGGCAGACCG
TTGTGGCGATTACCGGGGCTCAGGTCAGCGTCGAGGTGCTGACCGCCGAAGGGCAAAAATTGCGGCCGCTGCTTTATGCG
CCTTTTTCTCTACAGAACGGCGATCAGGTCAGCATCGGTTCCCCGACTGCCGGCCTGCGCAATTATCTGGCGGTTCGTGG
CGGTTTCATTCATGAGCCGGTGCTCGGCAGCCTGTCCACCGACACGCTGGCCCAGGTCGGGCCCGCCGCGTTGGCAGCGG
GTGACCGGCTGGGCTTCACGCGCAGAACCGGCGGCCTTTCAGTATCGACTGCCGAACAACCGGCCTTCGAGATGCCGCGT
AGCGATGAGGTCATCACCCTGGATGTGGTCATGGGGCCGCGCAGTGACTGGTTCAGCGCCGAAGCACAGCAACTGCTGGC
GCAACAGACCTGGCTGGTCACGCCGCAATCCAACCGTATCGGCATTCGCCTGGCGGGCGAGCAATCGCTGCAACGTGCCG
TCGATGGCGAGTTGCCCAGCGAGGGCACCACAGTCGGCGCCATTCAAGTGCCGCCCAGTGGCCAGCCGGTGCTGTTTCTG
GCCGATCACCCGTTGACCGGTGGTTATCCGGTCATCGGCGCAGTCGCCACCTACCACCTGGACAAGGCCGGGCAGATTCC
GGTCAATGCCCGCATTCGCTTCAACCCGCTGAGCGCCTTCGAGCCAGTGCGCCCCGCCACTTCAGACGAGACCAAGAACA
GATGA

Upstream 100 bases:

>100_bases
GGTCATGGCGTCCCGTGTGCCGTTTGCGATTTCCCACGCGCCGGGCCACATGTTCATTACCGATATCCCGGACAGCTACT
ACCACGTATAGGAGAGGTTC

Downstream 100 bases:

>100_bases
AAAAGGTTCTGATAGCCAATCGTGGCGAAATTGCCGTTCGTATTGCCCGTGCCTGCCGTGACTACGGAGTCGCCTCGGTG
GCGGTGTACGCCGATGCCGA

Product: Urea amidolyase-related protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 534; Mature: 534

Protein sequence:

>534_residues
MRFYPANLDALLVELSNLDETLALFESLQQMPIAGVEEIVPAARTLLVHFRPSAIGFEALATQIASRDIRGKAREAGKLI
EIPVHYNGEDLADVARELDISVEEVIKRHTSSDYNVAFCGFAPGFAYLSGGAGFVVPRRSTPRTRIPAGAVALAGGFSGI
YPQASPGGWQIIGVTTSTMWDLGRDEPALLQPGYRVRFQDAGPLPETRVQVAAPVRPQATTVSEDYLQIETPGLQTLFQD
LGRPGRAGQGVSASGALDRGALRAANRAVGNDPATACLEILMGGLTFTCQGQTVVAITGAQVSVEVLTAEGQKLRPLLYA
PFSLQNGDQVSIGSPTAGLRNYLAVRGGFIHEPVLGSLSTDTLAQVGPAALAAGDRLGFTRRTGGLSVSTAEQPAFEMPR
SDEVITLDVVMGPRSDWFSAEAQQLLAQQTWLVTPQSNRIGIRLAGEQSLQRAVDGELPSEGTTVGAIQVPPSGQPVLFL
ADHPLTGGYPVIGAVATYHLDKAGQIPVNARIRFNPLSAFEPVRPATSDETKNR

Sequences:

>Translated_534_residues
MRFYPANLDALLVELSNLDETLALFESLQQMPIAGVEEIVPAARTLLVHFRPSAIGFEALATQIASRDIRGKAREAGKLI
EIPVHYNGEDLADVARELDISVEEVIKRHTSSDYNVAFCGFAPGFAYLSGGAGFVVPRRSTPRTRIPAGAVALAGGFSGI
YPQASPGGWQIIGVTTSTMWDLGRDEPALLQPGYRVRFQDAGPLPETRVQVAAPVRPQATTVSEDYLQIETPGLQTLFQD
LGRPGRAGQGVSASGALDRGALRAANRAVGNDPATACLEILMGGLTFTCQGQTVVAITGAQVSVEVLTAEGQKLRPLLYA
PFSLQNGDQVSIGSPTAGLRNYLAVRGGFIHEPVLGSLSTDTLAQVGPAALAAGDRLGFTRRTGGLSVSTAEQPAFEMPR
SDEVITLDVVMGPRSDWFSAEAQQLLAQQTWLVTPQSNRIGIRLAGEQSLQRAVDGELPSEGTTVGAIQVPPSGQPVLFL
ADHPLTGGYPVIGAVATYHLDKAGQIPVNARIRFNPLSAFEPVRPATSDETKNR
>Mature_534_residues
MRFYPANLDALLVELSNLDETLALFESLQQMPIAGVEEIVPAARTLLVHFRPSAIGFEALATQIASRDIRGKAREAGKLI
EIPVHYNGEDLADVARELDISVEEVIKRHTSSDYNVAFCGFAPGFAYLSGGAGFVVPRRSTPRTRIPAGAVALAGGFSGI
YPQASPGGWQIIGVTTSTMWDLGRDEPALLQPGYRVRFQDAGPLPETRVQVAAPVRPQATTVSEDYLQIETPGLQTLFQD
LGRPGRAGQGVSASGALDRGALRAANRAVGNDPATACLEILMGGLTFTCQGQTVVAITGAQVSVEVLTAEGQKLRPLLYA
PFSLQNGDQVSIGSPTAGLRNYLAVRGGFIHEPVLGSLSTDTLAQVGPAALAAGDRLGFTRRTGGLSVSTAEQPAFEMPR
SDEVITLDVVMGPRSDWFSAEAQQLLAQQTWLVTPQSNRIGIRLAGEQSLQRAVDGELPSEGTTVGAIQVPPSGQPVLFL
ADHPLTGGYPVIGAVATYHLDKAGQIPVNARIRFNPLSAFEPVRPATSDETKNR

Specific function: Unknown

COG id: COG1984

COG function: function code E; Allophanate hydrolase subunit 2

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis ycsJ and yeast urea amidolyase (DUR1,2) [H]

Homologues:

Organism=Escherichia coli, GI1786930, Length=314, Percent_Identity=34.3949044585987, Blast_Score=138, Evalue=9e-34,
Organism=Escherichia coli, GI1786929, Length=191, Percent_Identity=38.7434554973822, Blast_Score=119, Evalue=4e-28,
Organism=Saccharomyces cerevisiae, GI6319685, Length=312, Percent_Identity=33.974358974359, Blast_Score=120, Evalue=5e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003778 [H]

Pfam domain/function: PF02626 AHS2 [H]

EC number: NA

Molecular weight: Translated: 56649; Mature: 56649

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFYPANLDALLVELSNLDETLALFESLQQMPIAGVEEIVPAARTLLVHFRPSAIGFEAL
CCEECCCHHEEHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHEEEEEEECCCCCCHHHH
ATQIASRDIRGKAREAGKLIEIPVHYNGEDLADVARELDISVEEVIKRHTSSDYNVAFCG
HHHHHHHCCCCCHHHCCCEEEEEEEECCCHHHHHHHHHCCCHHHHHHHHCCCCCCEEEEE
FAPGFAYLSGGAGFVVPRRSTPRTRIPAGAVALAGGFSGIYPQASPGGWQIIGVTTSTMW
CCCCCCEECCCCEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEEEEEHHHH
DLGRDEPALLQPGYRVRFQDAGPLPETRVQVAAPVRPQATTVSEDYLQIETPGLQTLFQD
HCCCCCCHHCCCCCEEEECCCCCCCCCCEEEECCCCCCCCCCCCCEEEEECCCHHHHHHH
LGRPGRAGQGVSASGALDRGALRAANRAVGNDPATACLEILMGGLTFTCQGQTVVAITGA
CCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCEEEEECCCEEEEEECC
QVSVEVLTAEGQKLRPLLYAPFSLQNGDQVSIGSPTAGLRNYLAVRGGFIHEPVLGSLST
EEEEEEEECCCCCCCEEEECCEECCCCCEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCH
DTLAQVGPAALAAGDRLGFTRRTGGLSVSTAEQPAFEMPRSDEVITLDVVMGPRSDWFSA
HHHHHCCCHHHHCCCCCCCEECCCCEEEECCCCCHHCCCCCCCEEEEEEEECCCCCHHHH
EAQQLLAQQTWLVTPQSNRIGIRLAGEQSLQRAVDGELPSEGTTVGAIQVPPSGQPVLFL
HHHHHHHHHEEEECCCCCEEEEEECCHHHHHHHHCCCCCCCCCEEEEEEECCCCCCEEEE
ADHPLTGGYPVIGAVATYHLDKAGQIPVNARIRFNPLSAFEPVRPATSDETKNR
ECCCCCCCCHHHHHHHHEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRFYPANLDALLVELSNLDETLALFESLQQMPIAGVEEIVPAARTLLVHFRPSAIGFEAL
CCEECCCHHEEHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHEEEEEEECCCCCCHHHH
ATQIASRDIRGKAREAGKLIEIPVHYNGEDLADVARELDISVEEVIKRHTSSDYNVAFCG
HHHHHHHCCCCCHHHCCCEEEEEEEECCCHHHHHHHHHCCCHHHHHHHHCCCCCCEEEEE
FAPGFAYLSGGAGFVVPRRSTPRTRIPAGAVALAGGFSGIYPQASPGGWQIIGVTTSTMW
CCCCCCEECCCCEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEEEEEHHHH
DLGRDEPALLQPGYRVRFQDAGPLPETRVQVAAPVRPQATTVSEDYLQIETPGLQTLFQD
HCCCCCCHHCCCCCEEEECCCCCCCCCCEEEECCCCCCCCCCCCCEEEEECCCHHHHHHH
LGRPGRAGQGVSASGALDRGALRAANRAVGNDPATACLEILMGGLTFTCQGQTVVAITGA
CCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCEEEEECCCEEEEEECC
QVSVEVLTAEGQKLRPLLYAPFSLQNGDQVSIGSPTAGLRNYLAVRGGFIHEPVLGSLST
EEEEEEEECCCCCCCEEEECCEECCCCCEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCH
DTLAQVGPAALAAGDRLGFTRRTGGLSVSTAEQPAFEMPRSDEVITLDVVMGPRSDWFSA
HHHHHCCCHHHHCCCCCCCEECCCCEEEECCCCCHHCCCCCCCEEEEEEEECCCCCHHHH
EAQQLLAQQTWLVTPQSNRIGIRLAGEQSLQRAVDGELPSEGTTVGAIQVPPSGQPVLFL
HHHHHHHHHEEEECCCCCEEEEEECCHHHHHHHHCCCCCCCCCEEEEEEECCCCCCEEEE
ADHPLTGGYPVIGAVATYHLDKAGQIPVNARIRFNPLSAFEPVRPATSDETKNR
ECCCCCCCCHHHHHHHHEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]