| Definition | Vibrio fischeri ES114 chromosome I, complete genome. |
|---|---|
| Accession | NC_006840 |
| Length | 2,897,536 |
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The map label for this gene is yeaD [H]
Identifier: 59711519
GI number: 59711519
Start: 1006420
End: 1007295
Strand: Reverse
Name: yeaD [H]
Synonym: VF_0912
Alternate gene names: 59711519
Gene position: 1007295-1006420 (Counterclockwise)
Preceding gene: 59711520
Following gene: 59711517
Centisome position: 34.76
GC content: 41.55
Gene sequence:
>876_bases ATGAATCTTACTCAGCTTCCAATTATCAGTGTATTATCTGATAACGTCACTGTTGCTCAATTAGATGATGTAAAAGTGAT TCGTGTCATTCATGACAAAGCCAATGCAGCCATTTCTCTTCATGGTGGCCATGTTTTATCTTTTACGCCAAAAGGACAAG ACGATCTTATTTGGATGAGTAAAGAAGCCATCTTTAACCCTGAAAAAGCAATTCGTGGCGGCGTTCCTGTTTGTTGGCCA TGGTTTGGTCGTATCGCCGATCCTGCTCACGGTTTTGCTCGTAATAATGAGTGGACGCTTATTGAACACCGTGAAAATGA TAATGGCGTTATTATCGTTCTAGGATTAGAAGCATCTGAAGCAACCAAAGCGATTTGGCCTTTTGAATTTGAAGCACGCT TAACCGTTGAAATTGGTGATGAGTTACGTATTACGCTTGATGCAAAAAATACGGATAGCAAAGCATGGAATTGTTCTGGT GCTTTACACACTTACCTTAACGTTGCGGATATTGCTTCAACAACAATTACGGGTATGGGTCCAACATATATTGACGGCCT TCAAAATGCCAAACTATGTACAGGCGAAGATACTCTATCAATAAGCGCTGCCGTTGACCGTGTATATACTCAACCAGAAA ATACCGTATCAGTTTCAGACTCTCAGCGTACATTAACGGTGACGAATTCAGGTCATAATGCTGCGGTTATTTGGAACCCT TGGATTGAAGGCGCGGAATCGATGGCTGATATGAATAATGATGGCTACAAAACCATGGTGTGTGTTGAGTCTACTTACCA CGCAACTAGCTTAGAAGAAGCCCAAACCGTTGAACCAGGTAATGCATTTACGCTAACCACAACGATTAAAGCGTAA
Upstream 100 bases:
>100_bases TAATTCAGTATTTATCCTTTTTCTATTCAATCAAAAAGAAACTATTTCTCTGAATATTAAATAGAAGAAGAATGCATATT TATTATTTTAGGAGTTACCT
Downstream 100 bases:
>100_bases GATCAAGGTAACCTACTTCGATATTTACCTAAACAAAAACGGAAGCCACTGAGGCTTCCGTTTTTTATTGTTTGGAAAAT AAAGATTGTCTTTTATCTTT
Product: hypothetical protein
Products: NA
Alternate protein names: Putative D-hexose-6-phosphate mutarotase; Unknown protein from 2D-page spots T26/PR37 [H]
Number of amino acids: Translated: 291; Mature: 291
Protein sequence:
>291_residues MNLTQLPIISVLSDNVTVAQLDDVKVIRVIHDKANAAISLHGGHVLSFTPKGQDDLIWMSKEAIFNPEKAIRGGVPVCWP WFGRIADPAHGFARNNEWTLIEHRENDNGVIIVLGLEASEATKAIWPFEFEARLTVEIGDELRITLDAKNTDSKAWNCSG ALHTYLNVADIASTTITGMGPTYIDGLQNAKLCTGEDTLSISAAVDRVYTQPENTVSVSDSQRTLTVTNSGHNAAVIWNP WIEGAESMADMNNDGYKTMVCVESTYHATSLEEAQTVEPGNAFTLTTTIKA
Sequences:
>Translated_291_residues MNLTQLPIISVLSDNVTVAQLDDVKVIRVIHDKANAAISLHGGHVLSFTPKGQDDLIWMSKEAIFNPEKAIRGGVPVCWP WFGRIADPAHGFARNNEWTLIEHRENDNGVIIVLGLEASEATKAIWPFEFEARLTVEIGDELRITLDAKNTDSKAWNCSG ALHTYLNVADIASTTITGMGPTYIDGLQNAKLCTGEDTLSISAAVDRVYTQPENTVSVSDSQRTLTVTNSGHNAAVIWNP WIEGAESMADMNNDGYKTMVCVESTYHATSLEEAQTVEPGNAFTLTTTIKA >Mature_291_residues MNLTQLPIISVLSDNVTVAQLDDVKVIRVIHDKANAAISLHGGHVLSFTPKGQDDLIWMSKEAIFNPEKAIRGGVPVCWP WFGRIADPAHGFARNNEWTLIEHRENDNGVIIVLGLEASEATKAIWPFEFEARLTVEIGDELRITLDAKNTDSKAWNCSG ALHTYLNVADIASTTITGMGPTYIDGLQNAKLCTGEDTLSISAAVDRVYTQPENTVSVSDSQRTLTVTNSGHNAAVIWNP WIEGAESMADMNNDGYKTMVCVESTYHATSLEEAQTVEPGNAFTLTTTIKA
Specific function: Unknown
COG id: COG0676
COG function: function code G; Uncharacterized enzymes related to aldose 1-epimerase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the Glucose-6-phosphate 1-epimerase family [H]
Homologues:
Organism=Escherichia coli, GI87081973, Length=267, Percent_Identity=39.3258426966292, Blast_Score=200, Evalue=9e-53, Organism=Saccharomyces cerevisiae, GI6323746, Length=240, Percent_Identity=30.4166666666667, Blast_Score=106, Evalue=4e-24, Organism=Drosophila melanogaster, GI19921284, Length=276, Percent_Identity=31.5217391304348, Blast_Score=124, Evalue=7e-29, Organism=Drosophila melanogaster, GI28574481, Length=173, Percent_Identity=29.4797687861272, Blast_Score=77, Evalue=1e-14,
Paralogues:
None
Copy number: 560 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008183 - InterPro: IPR011013 - InterPro: IPR014718 [H]
Pfam domain/function: PF01263 Aldose_epim [H]
EC number: =5.1.3.15 [H]
Molecular weight: Translated: 31715; Mature: 31715
Theoretical pI: Translated: 4.50; Mature: 4.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNLTQLPIISVLSDNVTVAQLDDVKVIRVIHDKANAAISLHGGHVLSFTPKGQDDLIWMS CCCCCCCEEEECCCCEEEEEECCEEEEEEEECCCCEEEEEECCEEEEECCCCCCCEEEEE KEAIFNPEKAIRGGVPVCWPWFGRIADPAHGFARNNEWTLIEHRENDNGVIIVLGLEASE HHHHCCCHHHHHCCCCEEEHHHCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEECCCCC ATKAIWPFEFEARLTVEIGDELRITLDAKNTDSKAWNCSGALHTYLNVADIASTTITGMG CCCEECCEEEEEEEEEEECCEEEEEEECCCCCCCCEECCCCHHHHEEHHHHHHEEECCCC PTYIDGLQNAKLCTGEDTLSISAAVDRVYTQPENTVSVSDSQRTLTVTNSGHNAAVIWNP CHHHHCCCCCEEECCCCCEEEHHHHHHHHCCCCCEEEECCCCEEEEEEECCCEEEEEECC WIEGAESMADMNNDGYKTMVCVESTYHATSLEEAQTVEPGNAFTLTTTIKA CCCCHHHHHHCCCCCCEEEEEEECCCCCCCCCHHHCCCCCCEEEEEEEECC >Mature Secondary Structure MNLTQLPIISVLSDNVTVAQLDDVKVIRVIHDKANAAISLHGGHVLSFTPKGQDDLIWMS CCCCCCCEEEECCCCEEEEEECCEEEEEEEECCCCEEEEEECCEEEEECCCCCCCEEEEE KEAIFNPEKAIRGGVPVCWPWFGRIADPAHGFARNNEWTLIEHRENDNGVIIVLGLEASE HHHHCCCHHHHHCCCCEEEHHHCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEECCCCC ATKAIWPFEFEARLTVEIGDELRITLDAKNTDSKAWNCSGALHTYLNVADIASTTITGMG CCCEECCEEEEEEEEEEECCEEEEEEECCCCCCCCEECCCCHHHHEEHHHHHHEEECCCC PTYIDGLQNAKLCTGEDTLSISAAVDRVYTQPENTVSVSDSQRTLTVTNSGHNAAVIWNP CHHHHCCCCCEEECCCCCEEEHHHHHHHHCCCCCEEEECCCCEEEEEEECCCEEEEEECC WIEGAESMADMNNDGYKTMVCVESTYHATSLEEAQTVEPGNAFTLTTTIKA CCCCHHHHHHCCCCCCEEEEEEECCCCCCCCCHHHCCCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9097040; 9278503; 9298646; 10493123 [H]