Click here to switch to the map view.

The map label for this gene is oppF2 [H]

Identifier: 59711284

GI number: 59711284

Start: 739400

End: 740038

Strand: Reverse

Name: oppF2 [H]

Synonym: VF_0677

Alternate gene names: 59711284

Gene position: 740038-739400 (Counterclockwise)

Preceding gene: 59711285

Following gene: 59711283

Centisome position: 25.54

GC content: 36.62

Gene sequence:

>639_bases
ATGCATACAGTCAAGCACTATGGCATGCCCTACCCAAAAACTGGAATTGATATGATCTCTTTAACTAATGCGATAGTCGA
ATACCAAGAAAAAGCTCTCGCACTACCCAATATCAACCTCCATAAAGGAGAAAGACTTGGATTAAATGGTGTGAGTGGAT
CAGGTAAATCAACTCTTGCGATGGTATTAGCGGGATTTATCAAACCAAAAATGGGAGAACTTAACGTTCCTATCTATGGA
AAAAAAGCACCTAATCCAGTCCAATGGGTTGGCCAACATCCTGAGCTGGCTTTTAACCCTAAGTGGCACATACTTAAATC
ATTAAAAGAAAGCTTTCAAGAACATGACTTTGAACACCTTCTACGTCAATTTGATATTGATAAACAATGGTTAAGTCGTT
TTCCTACAGAATTATCTGGTGGGCAGTTGCAACGCTTGGCTTTACTTCGTGCGCTTACGCCTAGTACTCAATATTTGTTA
TGTGATGAAATCACCGCTCAACTTGATTCGATAACTCAACAAACCATTTGGAAGCAATTATTGATTTTACAAGAAAAGAG
AAATATAGGACTCTTAGTTATTTCACACGAAAAACACTTACTCAATTCCATTTGTAAAAAAATAGTTACTATAAATTAA

Upstream 100 bases:

>100_bases
AATATTGCGGATCATATATTGGTTCTAGATAGCAGCAGAGATGATGTCGTACCTTCTAGCGAATACACAACACCAACCCA
TATTATAAACGGCGATAGTA

Downstream 100 bases:

>100_bases
GAAGAAGTCTTCTGTTATTTCTATCAAATAAAAGAACAAATTTTCTTTTTATTTTTAATAAAAAAAACGAGTTAAAAAAG
TGCGTTTTTTCGTTATTTAT

Product: putative dipeptide ABC transporter

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 212; Mature: 212

Protein sequence:

>212_residues
MHTVKHYGMPYPKTGIDMISLTNAIVEYQEKALALPNINLHKGERLGLNGVSGSGKSTLAMVLAGFIKPKMGELNVPIYG
KKAPNPVQWVGQHPELAFNPKWHILKSLKESFQEHDFEHLLRQFDIDKQWLSRFPTELSGGQLQRLALLRALTPSTQYLL
CDEITAQLDSITQQTIWKQLLILQEKRNIGLLVISHEKHLLNSICKKIVTIN

Sequences:

>Translated_212_residues
MHTVKHYGMPYPKTGIDMISLTNAIVEYQEKALALPNINLHKGERLGLNGVSGSGKSTLAMVLAGFIKPKMGELNVPIYG
KKAPNPVQWVGQHPELAFNPKWHILKSLKESFQEHDFEHLLRQFDIDKQWLSRFPTELSGGQLQRLALLRALTPSTQYLL
CDEITAQLDSITQQTIWKQLLILQEKRNIGLLVISHEKHLLNSICKKIVTIN
>Mature_212_residues
MHTVKHYGMPYPKTGIDMISLTNAIVEYQEKALALPNINLHKGERLGLNGVSGSGKSTLAMVLAGFIKPKMGELNVPIYG
KKAPNPVQWVGQHPELAFNPKWHILKSLKESFQEHDFEHLLRQFDIDKQWLSRFPTELSGGQLQRLALLRALTPSTQYLL
CDEITAQLDSITQQTIWKQLLILQEKRNIGLLVISHEKHLLNSICKKIVTIN

Specific function: Part of a transport system that may be involved in oligopeptide uptake. Probably responsible for energy coupling to the transport system. Important for S.aureus growth and survival during the infection process [H]

COG id: COG1124

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Escherichia coli, GI1788506, Length=200, Percent_Identity=30, Blast_Score=91, Evalue=5e-20,
Organism=Escherichia coli, GI1789891, Length=197, Percent_Identity=31.9796954314721, Blast_Score=91, Evalue=5e-20,
Organism=Escherichia coli, GI1787758, Length=186, Percent_Identity=31.7204301075269, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1787500, Length=201, Percent_Identity=25.3731343283582, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI48994883, Length=200, Percent_Identity=29.5, Blast_Score=75, Evalue=2e-15,
Organism=Escherichia coli, GI1786253, Length=191, Percent_Identity=28.2722513089005, Blast_Score=74, Evalue=6e-15,
Organism=Escherichia coli, GI1787547, Length=192, Percent_Identity=28.6458333333333, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1786398, Length=208, Percent_Identity=29.3269230769231, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI145693107, Length=226, Percent_Identity=25.6637168141593, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1789962, Length=200, Percent_Identity=26.5, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786703, Length=188, Percent_Identity=29.2553191489362, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI87081791, Length=190, Percent_Identity=26.8421052631579, Blast_Score=67, Evalue=6e-13,
Organism=Escherichia coli, GI1787759, Length=227, Percent_Identity=24.2290748898678, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787712, Length=194, Percent_Identity=28.3505154639175, Blast_Score=66, Evalue=1e-12,
Organism=Escherichia coli, GI1786698, Length=188, Percent_Identity=29.2553191489362, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1789963, Length=199, Percent_Identity=28.643216080402, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1786563, Length=195, Percent_Identity=29.7435897435897, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 24036; Mature: 24036

Theoretical pI: Translated: 9.77; Mature: 9.77

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHTVKHYGMPYPKTGIDMISLTNAIVEYQEKALALPNINLHKGERLGLNGVSGSGKSTLA
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHH
MVLAGFIKPKMGELNVPIYGKKAPNPVQWVGQHPELAFNPKWHILKSLKESFQEHDFEHL
HHHHHHHCCCCCCCCCCEECCCCCCHHHHCCCCCCEEECCHHHHHHHHHHHHHHCCHHHH
LRQFDIDKQWLSRFPTELSGGQLQRLALLRALTPSTQYLLCDEITAQLDSITQQTIWKQL
HHHCCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHH
LILQEKRNIGLLVISHEKHLLNSICKKIVTIN
HHHHHCCCCEEEEECCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MHTVKHYGMPYPKTGIDMISLTNAIVEYQEKALALPNINLHKGERLGLNGVSGSGKSTLA
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHH
MVLAGFIKPKMGELNVPIYGKKAPNPVQWVGQHPELAFNPKWHILKSLKESFQEHDFEHL
HHHHHHHCCCCCCCCCCEECCCCCCHHHHCCCCCCEEECCHHHHHHHHHHHHHHCCHHHH
LRQFDIDKQWLSRFPTELSGGQLQRLALLRALTPSTQYLLCDEITAQLDSITQQTIWKQL
HHHCCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHH
LILQEKRNIGLLVISHEKHLLNSICKKIVTIN
HHHHHCCCCEEEEECCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA