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The map label for this gene is ureD

Identifier: 59711283

GI number: 59711283

Start: 738167

End: 739030

Strand: Reverse

Name: ureD

Synonym: VF_0676

Alternate gene names: 59711283

Gene position: 739030-738167 (Counterclockwise)

Preceding gene: 59711284

Following gene: 59711282

Centisome position: 25.51

GC content: 40.74

Gene sequence:

>864_bases
ATGCCAAAAATAAATACATCATCTTCAGGTTGGTTAGCTGATATTTCCCTTTTCTATGAAAAAAGAGGGACAAATACCAA
ACTGGTTCATCGAGAACAAGTTGGCCCTTTAATGGTGCAGCGCCCTTTTTATCCTGAAACAGGTATCGCTCACACCTACT
TACTTCATCCTCCAGGCGGCGTAGTCGGTGGCGATCAACTCAATATCAATATTCATGTATCACCACAGGCTCACTCACTT
TTAACGACACCAGGAGCGACTAAGTTTTATCGCAGTTCAGGGGCTACCTCTTCACAAACACAAAACCTTACGGTTGAAAG
TGATGGATTTTTAGAGTGGTTACCTCAAGAAAATATCTTCTTTCCTGATAGTCAGGCTCAATTAAAAACTCAAGTTGAGC
TTCATAAGAATGCGCATTTTATTGGATGGGAGATGAACTGTTTTGGTCGCCCTGTTCTGGATGAAATATTTGAAAATGGA
TTTGTTACTGGCAGAACCAATATCAAAGTAGATGATCAACTGCTGCTATCTGAGTCGATGTACATTGATTCAATTGATGA
AATAAAACACGCAGCAGGCATGAGGCACTATCCCATGCTTGGCAACCTTTATATTTACCCAGCCTCAGAAGCACTAGAAG
AAAAATTAAGAACACTGATTGATGAAAATTTCCATGAACAACCTGAGTTATTTGGCAGTAGCAACCCTATTTGTGGGATT
ACTGAGATTGATGGCTTACTGGTTATTCGTTATTTAGGTCACCAAACAGAACCTATGATGGCGTGCTTTAGCACTTTATG
GCAACACACTCGTCAGCATTGGTTAGGCAAATTACCCGAAGTCCCACGAATCTGGGCTACATAA

Upstream 100 bases:

>100_bases
TATTCAGAATACTTATTTCTCTAGTTTTAAACTGGAGGCGTACGCTATTTATTTTCATTCTTTCTTATTCAAGAAATATG
CTATATCGGCAGGGTTAGTT

Downstream 100 bases:

>100_bases
TTAAGTTGGAATAGCTATGGAATTAACACCAAGAGAAAAAGACAAACTGCTGCTTGCCTCTGCTGGCATGATAGCTGAAA
GACGTAAAGCCCGTGGATTA

Product: urease accessory protein UreD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 286

Protein sequence:

>287_residues
MPKINTSSSGWLADISLFYEKRGTNTKLVHREQVGPLMVQRPFYPETGIAHTYLLHPPGGVVGGDQLNINIHVSPQAHSL
LTTPGATKFYRSSGATSSQTQNLTVESDGFLEWLPQENIFFPDSQAQLKTQVELHKNAHFIGWEMNCFGRPVLDEIFENG
FVTGRTNIKVDDQLLLSESMYIDSIDEIKHAAGMRHYPMLGNLYIYPASEALEEKLRTLIDENFHEQPELFGSSNPICGI
TEIDGLLVIRYLGHQTEPMMACFSTLWQHTRQHWLGKLPEVPRIWAT

Sequences:

>Translated_287_residues
MPKINTSSSGWLADISLFYEKRGTNTKLVHREQVGPLMVQRPFYPETGIAHTYLLHPPGGVVGGDQLNINIHVSPQAHSL
LTTPGATKFYRSSGATSSQTQNLTVESDGFLEWLPQENIFFPDSQAQLKTQVELHKNAHFIGWEMNCFGRPVLDEIFENG
FVTGRTNIKVDDQLLLSESMYIDSIDEIKHAAGMRHYPMLGNLYIYPASEALEEKLRTLIDENFHEQPELFGSSNPICGI
TEIDGLLVIRYLGHQTEPMMACFSTLWQHTRQHWLGKLPEVPRIWAT
>Mature_286_residues
PKINTSSSGWLADISLFYEKRGTNTKLVHREQVGPLMVQRPFYPETGIAHTYLLHPPGGVVGGDQLNINIHVSPQAHSLL
TTPGATKFYRSSGATSSQTQNLTVESDGFLEWLPQENIFFPDSQAQLKTQVELHKNAHFIGWEMNCFGRPVLDEIFENGF
VTGRTNIKVDDQLLLSESMYIDSIDEIKHAAGMRHYPMLGNLYIYPASEALEEKLRTLIDENFHEQPELFGSSNPICGIT
EIDGLLVIRYLGHQTEPMMACFSTLWQHTRQHWLGKLPEVPRIWAT

Specific function: Required for maturation of urease via the functional incorporation of the urease nickel metallocenter

COG id: COG0829

COG function: function code O; Urease accessory protein UreH

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ureD family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): URED_VIBF1 (Q5E725)

Other databases:

- EMBL:   CP000020
- RefSeq:   YP_204059.1
- STRING:   Q5E725
- GeneID:   3277370
- GenomeReviews:   CP000020_GR
- KEGG:   vfi:VF_0676
- NMPDR:   fig|312309.3.peg.1175
- eggNOG:   COG0829
- HOGENOM:   HBG711156
- OMA:   CLGRPVM
- ProtClustDB:   CLSK936967
- BioCyc:   VFIS312309:VF0676-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01384
- InterPro:   IPR002669

Pfam domain/function: PF01774 UreD

EC number: NA

Molecular weight: Translated: 32479; Mature: 32348

Theoretical pI: Translated: 5.87; Mature: 5.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKINTSSSGWLADISLFYEKRGTNTKLVHREQVGPLMVQRPFYPETGIAHTYLLHPPGG
CCCCCCCCCCCEEEEEEEEHHCCCCCEEEECCCCCCEEEECCCCCCCCCCEEEEECCCCC
VVGGDQLNINIHVSPQAHSLLTTPGATKFYRSSGATSSQTQNLTVESDGFLEWLPQENIF
EECCCEEEEEEEECCCCCEEEECCCCCHHHHCCCCCCCCCCEEEEECCCCEEECCCCCEE
FPDSQAQLKTQVELHKNAHFIGWEMNCFGRPVLDEIFENGFVTGRTNIKVDDQLLLSESM
CCCCHHHHHHHEEECCCCEEEEEECCCCCCHHHHHHHHCCEEECCCCEEECHHHHHHCCH
YIDSIDEIKHAAGMRHYPMLGNLYIYPASEALEEKLRTLIDENFHEQPELFGSSNPICGI
HHCCHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHHHHHCCCCCCHHHCCCCCCEEEE
TEIDGLLVIRYLGHQTEPMMACFSTLWQHTRQHWLGKLPEVPRIWAT
ECCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
PKINTSSSGWLADISLFYEKRGTNTKLVHREQVGPLMVQRPFYPETGIAHTYLLHPPGG
CCCCCCCCCCEEEEEEEEHHCCCCCEEEECCCCCCEEEECCCCCCCCCCEEEEECCCCC
VVGGDQLNINIHVSPQAHSLLTTPGATKFYRSSGATSSQTQNLTVESDGFLEWLPQENIF
EECCCEEEEEEEECCCCCEEEECCCCCHHHHCCCCCCCCCCEEEEECCCCEEECCCCCEE
FPDSQAQLKTQVELHKNAHFIGWEMNCFGRPVLDEIFENGFVTGRTNIKVDDQLLLSESM
CCCCHHHHHHHEEECCCCEEEEEECCCCCCHHHHHHHHCCEEECCCCEEECHHHHHHCCH
YIDSIDEIKHAAGMRHYPMLGNLYIYPASEALEEKLRTLIDENFHEQPELFGSSNPICGI
HHCCHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHHHHHCCCCCCHHHCCCCCCEEEE
TEIDGLLVIRYLGHQTEPMMACFSTLWQHTRQHWLGKLPEVPRIWAT
ECCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA