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The map label for this gene is ddpD [H]

Identifier: 59711285

GI number: 59711285

Start: 739989

End: 740741

Strand: Reverse

Name: ddpD [H]

Synonym: VF_0678

Alternate gene names: 59711285

Gene position: 740741-739989 (Counterclockwise)

Preceding gene: 59711286

Following gene: 59711284

Centisome position: 25.56

GC content: 40.24

Gene sequence:

>753_bases
ATGAAAAATAAAAACAGCATAGTACTTGAGTTAAAAGCGTTAGAAATCAGATTAACAGCAGATACAACCCCTTTATTTTC
TAATCTGTCGCTGTCTTTAAAGCAAGGTGAAATTCTCGGCATAATAGGCGCGAGTGGTAGTGGAAAAAGCTCATTAATTA
ATGCAATCATGCAAGCTCTTTCTGATGACTTTACCCTATCAGGAGAAATCCAAATAGCACAAGGGGCACGGCTAGCGTTA
GCTGCTCAAAGTCGTAATGCATTAAACCCAACAACTAAAATAGGCCAACAACTATCACAATTTATTCCAAAAAACTCATG
GCTTACTCGTAAGAATAAAGACAAGGTCCGTGAAGCATTAGCTCATGCACAACTGCCTTTTTCCGTGGCAGAGCTCTACC
CATACCAATTATCAGGAGGAATGGCAAAGCGCGTACTTTCAGCACTGGCCTTTATCCAACAACCTGACATATTGATTGCT
GATGAGCCAAGCTGCGGGATTAATGACGAATACAGTGAACCTCTTTTTGGACATTACCAGCATCTTGCTCATACAGATGG
AAAGACAGTCATTATCGTTAGTCATGATTTATCTCATGTTATCAATATTGCGGATCATATATTGGTTCTAGATAGCAGCA
GAGATGATGTCGTACCTTCTAGCGAATACACAACACCAACCCATATTATAAACGGCGATAGTAATGCATACAGTCAAGCA
CTATGGCATGCCCTACCCAAAAACTGGAATTGA

Upstream 100 bases:

>100_bases
GCCAGCCAATACCTACTCAGTGGGCAGTGGTGGTTAGCTTTGTTTCCGGGGATAGTGTTAGTAATAAGCTCATTGCTATT
AATATCAATTGGTAAGTCAT

Downstream 100 bases:

>100_bases
TATGATCTCTTTAACTAATGCGATAGTCGAATACCAAGAAAAAGCTCTCGCACTACCCAATATCAACCTCCATAAAGGAG
AAAGACTTGGATTAAATGGT

Product: oligopeptide transport ATP-binding protein OppD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MKNKNSIVLELKALEIRLTADTTPLFSNLSLSLKQGEILGIIGASGSGKSSLINAIMQALSDDFTLSGEIQIAQGARLAL
AAQSRNALNPTTKIGQQLSQFIPKNSWLTRKNKDKVREALAHAQLPFSVAELYPYQLSGGMAKRVLSALAFIQQPDILIA
DEPSCGINDEYSEPLFGHYQHLAHTDGKTVIIVSHDLSHVINIADHILVLDSSRDDVVPSSEYTTPTHIINGDSNAYSQA
LWHALPKNWN

Sequences:

>Translated_250_residues
MKNKNSIVLELKALEIRLTADTTPLFSNLSLSLKQGEILGIIGASGSGKSSLINAIMQALSDDFTLSGEIQIAQGARLAL
AAQSRNALNPTTKIGQQLSQFIPKNSWLTRKNKDKVREALAHAQLPFSVAELYPYQLSGGMAKRVLSALAFIQQPDILIA
DEPSCGINDEYSEPLFGHYQHLAHTDGKTVIIVSHDLSHVINIADHILVLDSSRDDVVPSSEYTTPTHIINGDSNAYSQA
LWHALPKNWN
>Mature_250_residues
MKNKNSIVLELKALEIRLTADTTPLFSNLSLSLKQGEILGIIGASGSGKSSLINAIMQALSDDFTLSGEIQIAQGARLAL
AAQSRNALNPTTKIGQQLSQFIPKNSWLTRKNKDKVREALAHAQLPFSVAELYPYQLSGGMAKRVLSALAFIQQPDILIA
DEPSCGINDEYSEPLFGHYQHLAHTDGKTVIIVSHDLSHVINIADHILVLDSSRDDVVPSSEYTTPTHIINGDSNAYSQA
LWHALPKNWN

Specific function: Part of the ABC transporter complex DdpABCDF, which is probably involved in D,D-dipeptide transport. Probably responsible for energy coupling to the transport system [H]

COG id: COG0444

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Escherichia coli, GI1787759, Length=206, Percent_Identity=33.9805825242718, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI48994883, Length=241, Percent_Identity=28.2157676348548, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI145693107, Length=268, Percent_Identity=28.7313432835821, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1787548, Length=245, Percent_Identity=28.9795918367347, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1789963, Length=262, Percent_Identity=27.8625954198473, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1789962, Length=235, Percent_Identity=27.2340425531915, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1788450, Length=196, Percent_Identity=28.5714285714286, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1787500, Length=235, Percent_Identity=25.9574468085106, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788506, Length=245, Percent_Identity=25.3061224489796, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1789032, Length=234, Percent_Identity=27.7777777777778, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787758, Length=194, Percent_Identity=26.2886597938144, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787041, Length=200, Percent_Identity=32.5, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1787370, Length=225, Percent_Identity=25.7777777777778, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1789586, Length=215, Percent_Identity=29.7674418604651, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1788225, Length=223, Percent_Identity=26.9058295964126, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI48994997, Length=202, Percent_Identity=26.2376237623762, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789890, Length=226, Percent_Identity=25.2212389380531, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI1787712, Length=222, Percent_Identity=27.4774774774775, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI1788165, Length=188, Percent_Identity=29.2553191489362, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1789991, Length=209, Percent_Identity=26.3157894736842, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI87081791, Length=229, Percent_Identity=26.6375545851528, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI87081709, Length=219, Percent_Identity=25.5707762557078, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1789672, Length=207, Percent_Identity=25.6038647342995, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1789891, Length=203, Percent_Identity=27.0935960591133, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1786398, Length=198, Percent_Identity=27.7777777777778, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790190, Length=215, Percent_Identity=26.046511627907, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1790544, Length=210, Percent_Identity=23.8095238095238, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1786563, Length=220, Percent_Identity=25, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788053, Length=205, Percent_Identity=27.8048780487805, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787547, Length=192, Percent_Identity=27.6041666666667, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI87081834, Length=209, Percent_Identity=27.7511961722488, Blast_Score=62, Evalue=3e-11,
Organism=Drosophila melanogaster, GI221500365, Length=194, Percent_Identity=27.319587628866, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI116007184, Length=194, Percent_Identity=27.319587628866, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24650855, Length=186, Percent_Identity=27.9569892473118, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24650853, Length=186, Percent_Identity=27.9569892473118, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI281362751, Length=210, Percent_Identity=26.6666666666667, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24581383, Length=204, Percent_Identity=29.9019607843137, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24581385, Length=204, Percent_Identity=29.9019607843137, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24581387, Length=204, Percent_Identity=29.9019607843137, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR010066
- InterPro:   IPR013563 [H]

Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]

EC number: NA

Molecular weight: Translated: 27262; Mature: 27262

Theoretical pI: Translated: 6.60; Mature: 6.60

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNKNSIVLELKALEIRLTADTTPLFSNLSLSLKQGEILGIIGASGSGKSSLINAIMQAL
CCCCCCEEEEEEEEEEEEECCCCCCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHH
SDDFTLSGEIQIAQGARLALAAQSRNALNPTTKIGQQLSQFIPKNSWLTRKNKDKVREAL
CCCCEECCEEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
AHAQLPFSVAELYPYQLSGGMAKRVLSALAFIQQPDILIADEPSCGINDEYSEPLFGHYQ
HHHCCCHHHHHHCCHHHCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHH
HLAHTDGKTVIIVSHDLSHVINIADHILVLDSSRDDVVPSSEYTTPTHIINGDSNAYSQA
HHHCCCCCEEEEEECCHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCEEECCCCHHHHHH
LWHALPKNWN
HHHHCCCCCC
>Mature Secondary Structure
MKNKNSIVLELKALEIRLTADTTPLFSNLSLSLKQGEILGIIGASGSGKSSLINAIMQAL
CCCCCCEEEEEEEEEEEEECCCCCCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHH
SDDFTLSGEIQIAQGARLALAAQSRNALNPTTKIGQQLSQFIPKNSWLTRKNKDKVREAL
CCCCEECCEEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
AHAQLPFSVAELYPYQLSGGMAKRVLSALAFIQQPDILIADEPSCGINDEYSEPLFGHYQ
HHHCCCHHHHHHCCHHHCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHH
HLAHTDGKTVIIVSHDLSHVINIADHILVLDSSRDDVVPSSEYTTPTHIINGDSNAYSQA
HHHCCCCCEEEEEECCHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCEEECCCCHHHHHH
LWHALPKNWN
HHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]