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The map label for this gene is yhbU [H]

Identifier: 59711100

GI number: 59711100

Start: 530344

End: 531345

Strand: Reverse

Name: yhbU [H]

Synonym: VF_0493

Alternate gene names: 59711100

Gene position: 531345-530344 (Counterclockwise)

Preceding gene: 59711101

Following gene: 59711099

Centisome position: 18.34

GC content: 41.02

Gene sequence:

>1002_bases
ATGGAACTCCTCTGCCCAGCCGGTAATTTGCCCGCACTAAAAACCGCTATTGATTGCGGCGCCGATGCTGTTTATATCGG
TTTTAAAGACGACACAAATGCTCGCCATTTTGCAGGCTTAAACTTTACAGGTAAAAAGCTTGAGAAAGCCGTGCAATATG
TTCACGATAAAAATAAACATATTCATGTTGCCTTAAATACATTTGCTCACCCAGATGGATTTAGCCGTTGGACAAAGGCT
GTAGATAACGCAGCAGCAATGGGAATTGATGCGCTTATTATTTCTGATATTGCTGTACTAGAATACGCTGCAACAACCTA
TCCTGATTTAGAGTTACACCTCTCGGTACAAGCATCTGCAACCAATGTTGCCGCTATTGATTTCTATAAAAAGAACTTCA
ATATTAAACGCGTTGTTTTGCCACGAGTGTTATCTATCCATCAAGTTAAACAACTTTCTCGAAATTTAACCTCTGATGTT
GATTTAGAAGTCTTCGCCTTTGGTAGTCTATGTATCATGTCTGAAGGTCGTTGTTACTTATCATCATACATGACAGGTGA
ATCACCAAACACTGTAGGCGCTTGCTCACCAGCAAAATACGTTCGTTGGCAAGAAACCGATAATGGGCTGGAATCTCGTT
TAAATAATATTTTAATCGACCGTTATGGTGAAGGTGAAAATGCCGGCTATCCAACCCTGTGTAAAGGACGCTTTGATGTA
GAAGGTAAAACCTTCCATGCTCTTGAGGAACCAACCAGTTTAAATACCTTATCTTTAGTTCCTGAATTATTTGCAGCTAA
TGTTGCATCAGTAAAAATAGAAGGACGTCAACGCAGCCCTGCTTATGTTGAGCAAGTAACTCGTACATGGCGTGCAGCTA
TCGATAGCTACAAAGCAAATCCTGAAGGCTATGCGGTAGAACCTAAATGGGATGCAACATTAGCGAATGTATCAGAGGGG
ACACAAACCACTCTTGGTGCTTATCATAAGAAGTGGCAATAG

Upstream 100 bases:

>100_bases
TATTTAAAACACAAAACAACTAAAAACCTGCCTTATATCAAGTTTCAAAATTTTGTTACTATTATCATAGAGCATCAGAT
TTTTGTAATTAGGTATTCTT

Downstream 100 bases:

>100_bases
GAGAACATCATGAAATACGCATTAGGTCCACTCCTATACTTTTGGTCTAAAGAAAACGTTGAGTCCTTTTATCAACAAGC
AACCAATAGTGAAGCTGATA

Product: collagenase-like protease YhbU

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 333

Protein sequence:

>333_residues
MELLCPAGNLPALKTAIDCGADAVYIGFKDDTNARHFAGLNFTGKKLEKAVQYVHDKNKHIHVALNTFAHPDGFSRWTKA
VDNAAAMGIDALIISDIAVLEYAATTYPDLELHLSVQASATNVAAIDFYKKNFNIKRVVLPRVLSIHQVKQLSRNLTSDV
DLEVFAFGSLCIMSEGRCYLSSYMTGESPNTVGACSPAKYVRWQETDNGLESRLNNILIDRYGEGENAGYPTLCKGRFDV
EGKTFHALEEPTSLNTLSLVPELFAANVASVKIEGRQRSPAYVEQVTRTWRAAIDSYKANPEGYAVEPKWDATLANVSEG
TQTTLGAYHKKWQ

Sequences:

>Translated_333_residues
MELLCPAGNLPALKTAIDCGADAVYIGFKDDTNARHFAGLNFTGKKLEKAVQYVHDKNKHIHVALNTFAHPDGFSRWTKA
VDNAAAMGIDALIISDIAVLEYAATTYPDLELHLSVQASATNVAAIDFYKKNFNIKRVVLPRVLSIHQVKQLSRNLTSDV
DLEVFAFGSLCIMSEGRCYLSSYMTGESPNTVGACSPAKYVRWQETDNGLESRLNNILIDRYGEGENAGYPTLCKGRFDV
EGKTFHALEEPTSLNTLSLVPELFAANVASVKIEGRQRSPAYVEQVTRTWRAAIDSYKANPEGYAVEPKWDATLANVSEG
TQTTLGAYHKKWQ
>Mature_333_residues
MELLCPAGNLPALKTAIDCGADAVYIGFKDDTNARHFAGLNFTGKKLEKAVQYVHDKNKHIHVALNTFAHPDGFSRWTKA
VDNAAAMGIDALIISDIAVLEYAATTYPDLELHLSVQASATNVAAIDFYKKNFNIKRVVLPRVLSIHQVKQLSRNLTSDV
DLEVFAFGSLCIMSEGRCYLSSYMTGESPNTVGACSPAKYVRWQETDNGLESRLNNILIDRYGEGENAGYPTLCKGRFDV
EGKTFHALEEPTSLNTLSLVPELFAANVASVKIEGRQRSPAYVEQVTRTWRAAIDSYKANPEGYAVEPKWDATLANVSEG
TQTTLGAYHKKWQ

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI1789548, Length=333, Percent_Identity=71.7717717717718, Blast_Score=520, Evalue=1e-149,
Organism=Escherichia coli, GI1788397, Length=315, Percent_Identity=30.1587301587302, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI87081910, Length=296, Percent_Identity=31.0810810810811, Blast_Score=110, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001539 [H]

Pfam domain/function: PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 36702; Mature: 36702

Theoretical pI: Translated: 6.60; Mature: 6.60

Prosite motif: PS01276 PEPTIDASE_U32

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELLCPAGNLPALKTAIDCGADAVYIGFKDDTNARHFAGLNFTGKKLEKAVQYVHDKNKH
CCEECCCCCCCHHHHHHHCCCCEEEEEECCCCCCCEEECCCCCHHHHHHHHHHHHCCCCE
IHVALNTFAHPDGFSRWTKAVDNAAAMGIDALIISDIAVLEYAATTYPDLELHLSVQASA
EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECC
TNVAAIDFYKKNFNIKRVVLPRVLSIHQVKQLSRNLTSDVDLEVFAFGSLCIMSEGRCYL
CEEEEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCEEEEECCCEEE
SSYMTGESPNTVGACSPAKYVRWQETDNGLESRLNNILIDRYGEGENAGYPTLCKGRFDV
EHHCCCCCCCCCCCCCCHHCEEEECCCCHHHHHHHHEEEECCCCCCCCCCCCEECCEECC
EGKTFHALEEPTSLNTLSLVPELFAANVASVKIEGRQRSPAYVEQVTRTWRAAIDSYKAN
CCCEEEECCCCCCCCHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCC
PEGYAVEPKWDATLANVSEGTQTTLGAYHKKWQ
CCCEEECCCCCCHHHCCCCCCHHHHHHHHHCCC
>Mature Secondary Structure
MELLCPAGNLPALKTAIDCGADAVYIGFKDDTNARHFAGLNFTGKKLEKAVQYVHDKNKH
CCEECCCCCCCHHHHHHHCCCCEEEEEECCCCCCCEEECCCCCHHHHHHHHHHHHCCCCE
IHVALNTFAHPDGFSRWTKAVDNAAAMGIDALIISDIAVLEYAATTYPDLELHLSVQASA
EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECC
TNVAAIDFYKKNFNIKRVVLPRVLSIHQVKQLSRNLTSDVDLEVFAFGSLCIMSEGRCYL
CEEEEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCEEEEECCCEEE
SSYMTGESPNTVGACSPAKYVRWQETDNGLESRLNNILIDRYGEGENAGYPTLCKGRFDV
EHHCCCCCCCCCCCCCCHHCEEEECCCCHHHHHHHHEEEECCCCCCCCCCCCEECCEECC
EGKTFHALEEPTSLNTLSLVPELFAANVASVKIEGRQRSPAYVEQVTRTWRAAIDSYKAN
CCCEEEECCCCCCCCHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCC
PEGYAVEPKWDATLANVSEGTQTTLGAYHKKWQ
CCCEEECCCCCCHHHCCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]