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The map label for this gene is ychF [H]

Identifier: 172087678

GI number: 172087678

Start: 832553

End: 833644

Strand: Reverse

Name: ychF [H]

Synonym: VF_0762

Alternate gene names: 172087678

Gene position: 833644-832553 (Counterclockwise)

Preceding gene: 59711370

Following gene: 59711366

Centisome position: 28.77

GC content: 41.03

Gene sequence:

>1092_bases
ATGGGTTTTAAATGCGGAATCGTTGGTCTTCCAAACGTTGGTAAATCAACACTATTTAACGCACTAACAAAAGCAGGAAT
CGAAGCAGCAAACTTCCCTTTCTGTACAATTGAGCCAAACACAGGTGTGGTTCCTGTTCCTGATCTACGTTTAGATGCAT
TAGCAAAAATCGTAAAACCAGAACGTATTCTTCCTACTACAATGGAATTCGTTGATATCGCTGGTTTAGTGGCAGGCGCA
TCTAAAGGTGAAGGTCTAGGTAACAAATTCCTAGCAAACATCCGTGAAACAGATGCAATTGGTCATGTTGTTCGTTGTTT
TGAAAATGAAAACATCATTCACGTTGCTGGTAAGATCTCACCAATTGAAGATATTGAGATCATCAACCTTGAACTTGCTC
TTGCTGATTTAGATTCGTGTGAACGTGCAATGCAACGTAATGCGAAAAAAGCAAAAGGCGGAGACAAAGACGCGAAGTTT
GAAATTTCTGTACTTGAGAAACTGCTTCCAGTATTAACTGAAGGTGGTATGGCTCGCACTGTTGAGTTAACTAAAGAAGA
AGCGGCAGCTATTGGTTACCTAAACTTCCTAACGTTAAAACCAACAATGTACATTGCTAACGTAAGCGAAGATGGCTTCG
AAGATAACCCATTCCTAGATATGGTTCGTGAATACGCAGAAAAAGAAAACAACGTAGTTGTTCCTGTTTGTGCTGCTATT
GAATCTGAGCTTTCTGAACTTGACGATGAAGATCGTGAAGAGTTCCTTGCTGATATGGGTATCGAAGAACCAGGTCTAAA
CCGCGTAATCCGCTCTGGTTATGAACTGCTTACTCTTCAAACTTACTTCACTGCTGGTGTTAAAGAAGTTCGTGCATGGA
CTATCCCTGTAGGAGCTACAGCACCACAAGCAGCTGGTAAGATCCATACTGACTTTGAAAAAGGCTTTATCCGTGCTGAA
GTTATTGGTTACGACAACTTCATCGAGTTCAACGGTGAGAGTGGAGCTAAAGAAGCAGGTAAATGGCGCCTAGAAGGTAA
AGAATATATCGTTAAAGATGGTGATGTTGTTCATTTCCGCTTCAACGTATAA

Upstream 100 bases:

>100_bases
TCTACACGCTGCCTTGATATCCTTCTCAAAGATGGATTAAGCAAAGCACAAAATCGTTTACACACATTCAAAGCTGAATA
ACACAGATAAGGTTTACATC

Downstream 100 bases:

>100_bases
TTAAATAAGGCCAGCAAATTTGCTGGCCTTTTTATTACTTGCTAATAATTCAACCACTTAAGATTACTTTTCAACCAGTC
CTCTGTTATTTTTCTTCCCC

Product: GTP-dependent nucleic acid-binding protein EngD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 363; Mature: 362

Protein sequence:

>363_residues
MGFKCGIVGLPNVGKSTLFNALTKAGIEAANFPFCTIEPNTGVVPVPDLRLDALAKIVKPERILPTTMEFVDIAGLVAGA
SKGEGLGNKFLANIRETDAIGHVVRCFENENIIHVAGKISPIEDIEIINLELALADLDSCERAMQRNAKKAKGGDKDAKF
EISVLEKLLPVLTEGGMARTVELTKEEAAAIGYLNFLTLKPTMYIANVSEDGFEDNPFLDMVREYAEKENNVVVPVCAAI
ESELSELDDEDREEFLADMGIEEPGLNRVIRSGYELLTLQTYFTAGVKEVRAWTIPVGATAPQAAGKIHTDFEKGFIRAE
VIGYDNFIEFNGESGAKEAGKWRLEGKEYIVKDGDVVHFRFNV

Sequences:

>Translated_363_residues
MGFKCGIVGLPNVGKSTLFNALTKAGIEAANFPFCTIEPNTGVVPVPDLRLDALAKIVKPERILPTTMEFVDIAGLVAGA
SKGEGLGNKFLANIRETDAIGHVVRCFENENIIHVAGKISPIEDIEIINLELALADLDSCERAMQRNAKKAKGGDKDAKF
EISVLEKLLPVLTEGGMARTVELTKEEAAAIGYLNFLTLKPTMYIANVSEDGFEDNPFLDMVREYAEKENNVVVPVCAAI
ESELSELDDEDREEFLADMGIEEPGLNRVIRSGYELLTLQTYFTAGVKEVRAWTIPVGATAPQAAGKIHTDFEKGFIRAE
VIGYDNFIEFNGESGAKEAGKWRLEGKEYIVKDGDVVHFRFNV
>Mature_362_residues
GFKCGIVGLPNVGKSTLFNALTKAGIEAANFPFCTIEPNTGVVPVPDLRLDALAKIVKPERILPTTMEFVDIAGLVAGAS
KGEGLGNKFLANIRETDAIGHVVRCFENENIIHVAGKISPIEDIEIINLELALADLDSCERAMQRNAKKAKGGDKDAKFE
ISVLEKLLPVLTEGGMARTVELTKEEAAAIGYLNFLTLKPTMYIANVSEDGFEDNPFLDMVREYAEKENNVVVPVCAAIE
SELSELDDEDREEFLADMGIEEPGLNRVIRSGYELLTLQTYFTAGVKEVRAWTIPVGATAPQAAGKIHTDFEKGFIRAEV
IGYDNFIEFNGESGAKEAGKWRLEGKEYIVKDGDVVHFRFNV

Specific function: GTP-dependent nucleic acid-binding protein which may act as a translation factor [H]

COG id: COG0012

COG function: function code J; Predicted GTPase, probable translation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI58761500, Length=369, Percent_Identity=45.2574525745258, Blast_Score=306, Evalue=1e-83,
Organism=Homo sapiens, GI58761502, Length=218, Percent_Identity=40.8256880733945, Blast_Score=161, Evalue=9e-40,
Organism=Escherichia coli, GI1787454, Length=363, Percent_Identity=78.236914600551, Blast_Score=597, Evalue=1e-172,
Organism=Escherichia coli, GI1789574, Length=127, Percent_Identity=33.0708661417323, Blast_Score=63, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17509631, Length=365, Percent_Identity=41.3698630136986, Blast_Score=292, Evalue=2e-79,
Organism=Saccharomyces cerevisiae, GI6319499, Length=369, Percent_Identity=40.1084010840108, Blast_Score=260, Evalue=2e-70,
Organism=Saccharomyces cerevisiae, GI6321773, Length=379, Percent_Identity=35.0923482849604, Blast_Score=204, Evalue=3e-53,
Organism=Saccharomyces cerevisiae, GI6321649, Length=144, Percent_Identity=40.9722222222222, Blast_Score=84, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24640873, Length=368, Percent_Identity=43.2065217391304, Blast_Score=300, Evalue=1e-81,
Organism=Drosophila melanogaster, GI24640877, Length=368, Percent_Identity=43.2065217391304, Blast_Score=300, Evalue=1e-81,
Organism=Drosophila melanogaster, GI24640875, Length=368, Percent_Identity=43.2065217391304, Blast_Score=300, Evalue=1e-81,
Organism=Drosophila melanogaster, GI24640879, Length=330, Percent_Identity=40.9090909090909, Blast_Score=245, Evalue=3e-65,
Organism=Drosophila melanogaster, GI24585318, Length=203, Percent_Identity=29.064039408867, Blast_Score=69, Evalue=7e-12,

Paralogues:

None

Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012675
- InterPro:   IPR004396
- InterPro:   IPR013029
- InterPro:   IPR006073
- InterPro:   IPR002917
- InterPro:   IPR012676
- InterPro:   IPR023192 [H]

Pfam domain/function: PF01926 MMR_HSR1; PF06071 YchF-GTPase_C [H]

EC number: NA

Molecular weight: Translated: 39720; Mature: 39589

Theoretical pI: Translated: 4.44; Mature: 4.44

Prosite motif: PS00443 GATASE_TYPE_II

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGFKCGIVGLPNVGKSTLFNALTKAGIEAANFPFCTIEPNTGVVPVPDLRLDALAKIVKP
CCEEECEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCEEECCCCCHHHHHHHHCC
ERILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFENENIIHVAGKIS
CCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
PIEDIEIINLELALADLDSCERAMQRNAKKAKGGDKDAKFEISVLEKLLPVLTEGGMART
CCCCEEEEEEEEEEHHHHHHHHHHHHCCHHCCCCCCCCEEHHHHHHHHHHHHCCCCCEEE
VELTKEEAAAIGYLNFLTLKPTMYIANVSEDGFEDNPFLDMVREYAEKENNVVVPVCAAI
EEECHHHHHHHHEEEEEEECCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEHHHHH
ESELSELDDEDREEFLADMGIEEPGLNRVIRSGYELLTLQTYFTAGVKEVRAWTIPVGAT
HHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHCCCCEEEEHHHHHHCHHHHEEEEEECCCC
APQAAGKIHTDFEKGFIRAEVIGYDNFIEFNGESGAKEAGKWRLEGKEYIVKDGDVVHFR
CCHHCCCEECHHHHCEEEEEEECCCCEEEECCCCCCCCCCCEEECCCEEEEECCCEEEEE
FNV
ECC
>Mature Secondary Structure 
GFKCGIVGLPNVGKSTLFNALTKAGIEAANFPFCTIEPNTGVVPVPDLRLDALAKIVKP
CEEECEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCEEECCCCCHHHHHHHHCC
ERILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFENENIIHVAGKIS
CCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
PIEDIEIINLELALADLDSCERAMQRNAKKAKGGDKDAKFEISVLEKLLPVLTEGGMART
CCCCEEEEEEEEEEHHHHHHHHHHHHCCHHCCCCCCCCEEHHHHHHHHHHHHCCCCCEEE
VELTKEEAAAIGYLNFLTLKPTMYIANVSEDGFEDNPFLDMVREYAEKENNVVVPVCAAI
EEECHHHHHHHHEEEEEEECCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEHHHHH
ESELSELDDEDREEFLADMGIEEPGLNRVIRSGYELLTLQTYFTAGVKEVRAWTIPVGAT
HHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHCCCCEEEEHHHHHHCHHHHEEEEEECCCC
APQAAGKIHTDFEKGFIRAEVIGYDNFIEFNGESGAKEAGKWRLEGKEYIVKDGDVVHFR
CCHHCCCEECHHHHCEEEEEEECCCCEEEECCCCCCCCCCCEEECCCEEEEECCCEEEEE
FNV
ECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA