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The map label for this gene is secD [H]

Identifier: 58617615

GI number: 58617615

Start: 1418564

End: 1420090

Strand: Reverse

Name: secD [H]

Synonym: ERGA_CDS_08880

Alternate gene names: 58617615

Gene position: 1420090-1418564 (Counterclockwise)

Preceding gene: 58617616

Following gene: 58617614

Centisome position: 94.68

GC content: 29.14

Gene sequence:

>1527_bases
GTGTATGATATGCTATTTAAATTAGAAATTAAACCAATAGTTGTAACATTGTTGTGTACAATTGCTATATATTTGGTATT
ACCAAATTTTATTGATAATAAGTTTTTGATATCGAATAAAAAAGTTAACTTAGGATTAGATTTACAAGGTGGAGTGTATT
TATTATTAGAAGCAGATTTTAAAGAATATTTAAAAGAAAGAATGTACGGATTATATGATGAAGTAAATGAGTTTCTGTTA
AGTAAGAATATAAAATATAAAAGTTTTGATGTATATGAAGATAAGTTGGTATTGATATTAAAAGATAGTCAAGATTTTGA
TCAAATTAAGTCATTTAATGATAAAAATGTGAAAATATCAAAGCAGGATGTTCGTATTGTAATATCTTTCTATGATAGCT
ATAAAGAGAATTTGTTAAAAAATATTATAACTGATTCGATTAGTAATATACGTCGTAGGCTTGATAAATCTGGGACCAAG
GAAATTACTATAAACAGTCATGGTAAAGATAGAATATCTTTGCAGATTCCAGGAATACATGACACTAGTCAAATTAAGAT
GTTATTAGGAAAAACTGCAAAGTTAACATTTCACTTATTGGAAAATGTTACTCAAATTTCATCTATTAATCCTTTAACTA
CAGTTTTATTGAAGGATGTACGTGGAAATACATATCCTATATTGAGAAAGGTTGAAATTAGTGGTGACTCTTTGGTGGAT
GTGTCTTCTGGAATAAATAGTCTTGGTAATGTAGTTGTGAATTTTAAATTAAATAATGCTGCAGCTAAAAAATTTGCTAA
GATTACAAAAGAGAATTTTAATAAGCCATTTGCCATAGTGTTGGACGGTGTGGTTCTTACTGCTCCTGTAATACGTGATC
CTATTTTAACTGGAAGTGGTGAGATTAGTGGTAATTTTACTGTTGAAAGTGCAAAAGAATTATCAATTTTGTTAAAATCT
GGAGCTTTACCTGCTCCTTTAAAAGTCATTGAAGAAAAAACAATTGGTTCAAGTTTGGGTGCTGAATATATAAAACAAGG
AAGATTAGCAATGATAGTGTCAGTAGTGGCAGTATCAACTTTTATTATATTTTTCTATGGTATATTTGGAGTGTTGGCTG
TTATTGGATTAGTCTTTAATATTATTTTTATTGTTGCTGCTCTAACTTTACTTCAAGCTACGCTAACGCTGCCTGGTATT
GCTGGTATTACTTTAACAGTTGGAATGTCTGTTGATGCTAATGTCTTAATCTTTGAGCGAATTAAAGAGGAGTTAAGGTC
GAAGAAAAAATTAAGATGGGCTGTAGAGTCTGGATTTAAAAATGCTATGTCTACGATATTTGATTCAAATATTACTACGC
TGATTGCTGCAGCAATTATGTTTATAATGGGTAGTGGACCAGTTAGTGGCTTTGCTATTACGCTATCTATAGGTATTTTA
TGTTCTATGTTTTCTGCAATTACATTGACAAAAATGCTTATAGATTTGTACATTAGGTTCTTTAATTTAAAGGTATTAAA
TATATAG

Upstream 100 bases:

>100_bases
ACATATGTTTGATAATGCATGTTGGTTTACAATGGTTAACCTGTGTTAGAAACTATTTTATTTGTTATCAATAATGTAAT
ATAATCCTGTAATTATTTTA

Downstream 100 bases:

>100_bases
TAATTTGTTATAAAGGTTAAATTTTTATTTATTTAAAAATTATTTTTTAATCATAATATTGCAGTGAATATAGTAACAGA
GATCATTGTTTGTTATAATT

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 508; Mature: 508

Protein sequence:

>508_residues
MYDMLFKLEIKPIVVTLLCTIAIYLVLPNFIDNKFLISNKKVNLGLDLQGGVYLLLEADFKEYLKERMYGLYDEVNEFLL
SKNIKYKSFDVYEDKLVLILKDSQDFDQIKSFNDKNVKISKQDVRIVISFYDSYKENLLKNIITDSISNIRRRLDKSGTK
EITINSHGKDRISLQIPGIHDTSQIKMLLGKTAKLTFHLLENVTQISSINPLTTVLLKDVRGNTYPILRKVEISGDSLVD
VSSGINSLGNVVVNFKLNNAAAKKFAKITKENFNKPFAIVLDGVVLTAPVIRDPILTGSGEISGNFTVESAKELSILLKS
GALPAPLKVIEEKTIGSSLGAEYIKQGRLAMIVSVVAVSTFIIFFYGIFGVLAVIGLVFNIIFIVAALTLLQATLTLPGI
AGITLTVGMSVDANVLIFERIKEELRSKKKLRWAVESGFKNAMSTIFDSNITTLIAAAIMFIMGSGPVSGFAITLSIGIL
CSMFSAITLTKMLIDLYIRFFNLKVLNI

Sequences:

>Translated_508_residues
MYDMLFKLEIKPIVVTLLCTIAIYLVLPNFIDNKFLISNKKVNLGLDLQGGVYLLLEADFKEYLKERMYGLYDEVNEFLL
SKNIKYKSFDVYEDKLVLILKDSQDFDQIKSFNDKNVKISKQDVRIVISFYDSYKENLLKNIITDSISNIRRRLDKSGTK
EITINSHGKDRISLQIPGIHDTSQIKMLLGKTAKLTFHLLENVTQISSINPLTTVLLKDVRGNTYPILRKVEISGDSLVD
VSSGINSLGNVVVNFKLNNAAAKKFAKITKENFNKPFAIVLDGVVLTAPVIRDPILTGSGEISGNFTVESAKELSILLKS
GALPAPLKVIEEKTIGSSLGAEYIKQGRLAMIVSVVAVSTFIIFFYGIFGVLAVIGLVFNIIFIVAALTLLQATLTLPGI
AGITLTVGMSVDANVLIFERIKEELRSKKKLRWAVESGFKNAMSTIFDSNITTLIAAAIMFIMGSGPVSGFAITLSIGIL
CSMFSAITLTKMLIDLYIRFFNLKVLNI
>Mature_508_residues
MYDMLFKLEIKPIVVTLLCTIAIYLVLPNFIDNKFLISNKKVNLGLDLQGGVYLLLEADFKEYLKERMYGLYDEVNEFLL
SKNIKYKSFDVYEDKLVLILKDSQDFDQIKSFNDKNVKISKQDVRIVISFYDSYKENLLKNIITDSISNIRRRLDKSGTK
EITINSHGKDRISLQIPGIHDTSQIKMLLGKTAKLTFHLLENVTQISSINPLTTVLLKDVRGNTYPILRKVEISGDSLVD
VSSGINSLGNVVVNFKLNNAAAKKFAKITKENFNKPFAIVLDGVVLTAPVIRDPILTGSGEISGNFTVESAKELSILLKS
GALPAPLKVIEEKTIGSSLGAEYIKQGRLAMIVSVVAVSTFIIFFYGIFGVLAVIGLVFNIIFIVAALTLLQATLTLPGI
AGITLTVGMSVDANVLIFERIKEELRSKKKLRWAVESGFKNAMSTIFDSNITTLIAAAIMFIMGSGPVSGFAITLSIGIL
CSMFSAITLTKMLIDLYIRFFNLKVLNI

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=509, Percent_Identity=33.5952848722986, Blast_Score=259, Evalue=2e-70,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 56274; Mature: 56274

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYDMLFKLEIKPIVVTLLCTIAIYLVLPNFIDNKFLISNKKVNLGLDLQGGVYLLLEADF
CCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCEEEEEEEECCCEEEEEECHH
KEYLKERMYGLYDEVNEFLLSKNIKYKSFDVYEDKLVLILKDSQDFDQIKSFNDKNVKIS
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCEEEEEEECCCCHHHHHCCCCCCEEEE
KQDVRIVISFYDSYKENLLKNIITDSISNIRRRLDKSGTKEITINSHGKDRISLQIPGIH
CCHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEEECCCC
DTSQIKMLLGKTAKLTFHLLENVTQISSINPLTTVLLKDVRGNTYPILRKVEISGDSLVD
CHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEEECCCCEEE
VSSGINSLGNVVVNFKLNNAAAKKFAKITKENFNKPFAIVLDGVVLTAPVIRDPILTGSG
HHHHHHHHCCEEEEEEECHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCCCCC
EISGNFTVESAKELSILLKSGALPAPLKVIEEKTIGSSLGAEYIKQGRLAMIVSVVAVST
CCCCCEEECCHHHHHHHHHCCCCCCCHHHHHHHHCCHHCCHHHHHCCCHHHHHHHHHHHH
FIIFFYGIFGVLAVIGLVFNIIFIVAALTLLQATLTLPGIAGITLTVGMSVDANVLIFER
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHH
IKEELRSKKKLRWAVESGFKNAMSTIFDSNITTLIAAAIMFIMGSGPVSGFAITLSIGIL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEHHHHHHHH
CSMFSAITLTKMLIDLYIRFFNLKVLNI
HHHHHHHHHHHHHHHHHHHHHCEEEECC
>Mature Secondary Structure
MYDMLFKLEIKPIVVTLLCTIAIYLVLPNFIDNKFLISNKKVNLGLDLQGGVYLLLEADF
CCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCEEEEEEEECCCEEEEEECHH
KEYLKERMYGLYDEVNEFLLSKNIKYKSFDVYEDKLVLILKDSQDFDQIKSFNDKNVKIS
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCEEEEEEECCCCHHHHHCCCCCCEEEE
KQDVRIVISFYDSYKENLLKNIITDSISNIRRRLDKSGTKEITINSHGKDRISLQIPGIH
CCHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEEECCCC
DTSQIKMLLGKTAKLTFHLLENVTQISSINPLTTVLLKDVRGNTYPILRKVEISGDSLVD
CHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEEECCCCEEE
VSSGINSLGNVVVNFKLNNAAAKKFAKITKENFNKPFAIVLDGVVLTAPVIRDPILTGSG
HHHHHHHHCCEEEEEEECHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCCCCC
EISGNFTVESAKELSILLKSGALPAPLKVIEEKTIGSSLGAEYIKQGRLAMIVSVVAVST
CCCCCEEECCHHHHHHHHHCCCCCCCHHHHHHHHCCHHCCHHHHHCCCHHHHHHHHHHHH
FIIFFYGIFGVLAVIGLVFNIIFIVAALTLLQATLTLPGIAGITLTVGMSVDANVLIFER
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHH
IKEELRSKKKLRWAVESGFKNAMSTIFDSNITTLIAAAIMFIMGSGPVSGFAITLSIGIL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEHHHHHHHH
CSMFSAITLTKMLIDLYIRFFNLKVLNI
HHHHHHHHHHHHHHHHHHHHHCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA