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The map label for this gene is xynD [H]

Identifier: 55980848

GI number: 55980848

Start: 836744

End: 837937

Strand: Reverse

Name: xynD [H]

Synonym: TTHA0879

Alternate gene names: 55980848

Gene position: 837937-836744 (Counterclockwise)

Preceding gene: 55980849

Following gene: 55980846

Centisome position: 45.3

GC content: 69.51

Gene sequence:

>1194_bases
ATGGTGGAGCTTTTCGGCGCCGTTCTCCTCCTCTTTGGCCTCTCCGACCTCCTCTTCCGCTTCCTGGGCTTAGGGGCCTA
CGCCCACGGAAGCCGGCGGGAGCCCAAGGTGGCCCTCACCTTTGACGACGGCCCCTCGGAAAGGACGGAGGCCCTCCTCG
CCCTCCTCGCCCGGCACGGGGTCAAGGCCACCTTTTTCCTCACCGGGGAAAAAGCCCGGGCCAGGCCGGACCTGGTGGAG
GCCATAAAGCGGGCAGGCCACCAGGTGGAGGACCACGGGGAGTGGCACCGCCCCCTTTGGCTTTTCCTCCCCTGGGTGGA
GTGGCGGCACATGGCCCAAAACCCCGGGCGCTACTACCGCCCCCCTCACGGCCTCCACACCCCCTTCACCCGCCTCTTCG
CCCGGCTTTTGGGGAAGCGGGTCGTCCTTTGGGACCTGGAAAGCAAGGACTGGCTGAACCTCCCCCCCGAGGAGCTCGCC
GAACGGCTTCTCTTCTACCTGCGCCCCGGGTCCATCGTCCTCCTCCACGACGGGCCGGAGCGCACCCTGAGGCTTTTGGA
GCGGGCCCTGCCGGAGATGCTCCGCCTGGGGTACCGGCCCACCACCCTGGACGACCTCGCCCCTTTGCCCCTCACCCCGA
GGCTCGCCCTCATCCGGGGCCTCCAGGGGTTTGAGGAGCGCTACAACGCCAAGCACCGGGTGGCCCGGGCGGGGCTTGGC
CCCTTTGACCTTTTCCGGATAGAGAAGAAGCCCTTCCCCGGCCCCGCCCTTCCCGGGCTTCCCCCGGGCGTCCCCGCCTT
TGAGCTCCACCTGGAGAGCCAGAGGCTTATGGAACTCACCCCCTTTGAGGCGGTCCGCCACCTGCGGCGAAGCCTCGGGA
AGGTGGCGGAGAGGGTGGCCGAAGACCCCGAGGTGCGCCTCGTCTACGGGTACACCTACCTGGCGGACGGGGGGAGGATC
CTGGGCCTAAAGACCCAAGACCTCCCCTTCTGGCCGAGGCTTGTGGCGGGGCTCGCCAGCGCCTGGTTCCTTTGGCTCTA
CCGGGGGGAGCTCCCCAAGCGGAAAAGGCCCCCGGCCCGGATGGCCTACCTCAGCCGGGAGGAGCTCCTCGCGCGATACC
CACCGTCCACTCCCGCTTCCCCACCCCCGGAACCCGGTGCACGGCGAACCCCGCCTCCCGGAGGGCCCGCCTGA

Upstream 100 bases:

>100_bases
TCGGCCTCCGGGCGCCCTTTCTCGCGGGCTCGGGCATCTTCCTGGCCCTTAGCCTCCTCTACCTCCTCCTCTTCCGCGTG
CGCGGGCTCTGGAGGCGGTG

Downstream 100 bases:

>100_bases
AGGCCCCCTGGGCGGAGTAGGTGGCGAGCCTCCCGCCCCGCTTCAGGCTCTTCCGGAGCTTGAGGAGGACGGGGAGGGAC
CAGGCCTCGGGGTTGGCCTT

Product: oligosaccharide deacetylase

Products: NA

Alternate protein names: Endo-1,4-beta-xylanase D; XYLD; Xylanase D; Acetylated xylan deacetylase [H]

Number of amino acids: Translated: 397; Mature: 397

Protein sequence:

>397_residues
MVELFGAVLLLFGLSDLLFRFLGLGAYAHGSRREPKVALTFDDGPSERTEALLALLARHGVKATFFLTGEKARARPDLVE
AIKRAGHQVEDHGEWHRPLWLFLPWVEWRHMAQNPGRYYRPPHGLHTPFTRLFARLLGKRVVLWDLESKDWLNLPPEELA
ERLLFYLRPGSIVLLHDGPERTLRLLERALPEMLRLGYRPTTLDDLAPLPLTPRLALIRGLQGFEERYNAKHRVARAGLG
PFDLFRIEKKPFPGPALPGLPPGVPAFELHLESQRLMELTPFEAVRHLRRSLGKVAERVAEDPEVRLVYGYTYLADGGRI
LGLKTQDLPFWPRLVAGLASAWFLWLYRGELPKRKRPPARMAYLSREELLARYPPSTPASPPPEPGARRTPPPGGPA

Sequences:

>Translated_397_residues
MVELFGAVLLLFGLSDLLFRFLGLGAYAHGSRREPKVALTFDDGPSERTEALLALLARHGVKATFFLTGEKARARPDLVE
AIKRAGHQVEDHGEWHRPLWLFLPWVEWRHMAQNPGRYYRPPHGLHTPFTRLFARLLGKRVVLWDLESKDWLNLPPEELA
ERLLFYLRPGSIVLLHDGPERTLRLLERALPEMLRLGYRPTTLDDLAPLPLTPRLALIRGLQGFEERYNAKHRVARAGLG
PFDLFRIEKKPFPGPALPGLPPGVPAFELHLESQRLMELTPFEAVRHLRRSLGKVAERVAEDPEVRLVYGYTYLADGGRI
LGLKTQDLPFWPRLVAGLASAWFLWLYRGELPKRKRPPARMAYLSREELLARYPPSTPASPPPEPGARRTPPPGGPA
>Mature_397_residues
MVELFGAVLLLFGLSDLLFRFLGLGAYAHGSRREPKVALTFDDGPSERTEALLALLARHGVKATFFLTGEKARARPDLVE
AIKRAGHQVEDHGEWHRPLWLFLPWVEWRHMAQNPGRYYRPPHGLHTPFTRLFARLLGKRVVLWDLESKDWLNLPPEELA
ERLLFYLRPGSIVLLHDGPERTLRLLERALPEMLRLGYRPTTLDDLAPLPLTPRLALIRGLQGFEERYNAKHRVARAGLG
PFDLFRIEKKPFPGPALPGLPPGVPAFELHLESQRLMELTPFEAVRHLRRSLGKVAERVAEDPEVRLVYGYTYLADGGRI
LGLKTQDLPFWPRLVAGLASAWFLWLYRGELPKRKRPPARMAYLSREELLARYPPSTPASPPPEPGARRTPPPGGPA

Specific function: Endo-acting xylanase which displays no detectable activity against polysaccharides other than xylan. Hydrolyzes glucosidic bonds with retention of anomeric configuration [H]

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 polysaccharide deacetylase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6323338, Length=171, Percent_Identity=32.1637426900585, Blast_Score=75, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6323339, Length=172, Percent_Identity=30.2325581395349, Blast_Score=72, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008965
- InterPro:   IPR012291
- InterPro:   IPR001919
- InterPro:   IPR008985
- InterPro:   IPR011330
- InterPro:   IPR001137
- InterPro:   IPR013319
- InterPro:   IPR018208
- InterPro:   IPR002509
- InterPro:   IPR006311 [H]

Pfam domain/function: PF00553 CBM_2; PF00457 Glyco_hydro_11; PF01522 Polysacc_deac_1 [H]

EC number: =3.2.1.8 [H]

Molecular weight: Translated: 45104; Mature: 45104

Theoretical pI: Translated: 10.40; Mature: 10.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVELFGAVLLLFGLSDLLFRFLGLGAYAHGSRREPKVALTFDDGPSERTEALLALLARHG
CHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCC
VKATFFLTGEKARARPDLVEAIKRAGHQVEDHGEWHRPLWLFLPWVEWRHMAQNPGRYYR
CCEEEEEECCHHCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEECHHHHHHHHCCCCCCCC
PPHGLHTPFTRLFARLLGKRVVLWDLESKDWLNLPPEELAERLLFYLRPGSIVLLHDGPE
CCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCHH
RTLRLLERALPEMLRLGYRPTTLDDLAPLPLTPRLALIRGLQGFEERYNAKHRVARAGLG
HHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCCC
PFDLFRIEKKPFPGPALPGLPPGVPAFELHLESQRLMELTPFEAVRHLRRSLGKVAERVA
HHHHHEECCCCCCCCCCCCCCCCCCCEEEEECHHHHHHCCHHHHHHHHHHHHHHHHHHHH
EDPEVRLVYGYTYLADGGRILGLKTQDLPFWPRLVAGLASAWFLWLYRGELPKRKRPPAR
CCCCEEEEEEEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
MAYLSREELLARYPPSTPASPPPEPGARRTPPPGGPA
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MVELFGAVLLLFGLSDLLFRFLGLGAYAHGSRREPKVALTFDDGPSERTEALLALLARHG
CHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCC
VKATFFLTGEKARARPDLVEAIKRAGHQVEDHGEWHRPLWLFLPWVEWRHMAQNPGRYYR
CCEEEEEECCHHCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEECHHHHHHHHCCCCCCCC
PPHGLHTPFTRLFARLLGKRVVLWDLESKDWLNLPPEELAERLLFYLRPGSIVLLHDGPE
CCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCHH
RTLRLLERALPEMLRLGYRPTTLDDLAPLPLTPRLALIRGLQGFEERYNAKHRVARAGLG
HHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCCC
PFDLFRIEKKPFPGPALPGLPPGVPAFELHLESQRLMELTPFEAVRHLRRSLGKVAERVA
HHHHHEECCCCCCCCCCCCCCCCCCCEEEEECHHHHHHCCHHHHHHHHHHHHHHHHHHHH
EDPEVRLVYGYTYLADGGRILGLKTQDLPFWPRLVAGLASAWFLWLYRGELPKRKRPPAR
CCCCEEEEEEEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
MAYLSREELLARYPPSTPASPPPEPGARRTPPPGGPA
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8170399 [H]