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The map label for this gene is 54020397

Identifier: 54020397

GI number: 54020397

Start: 247794

End: 248555

Strand: Reverse

Name: 54020397

Synonym: mhp220

Alternate gene names: NA

Gene position: 248555-247794 (Counterclockwise)

Preceding gene: 54020398

Following gene: 54020396

Centisome position: 27.84

GC content: 21.65

Gene sequence:

>762_bases
ATGAAGGAATCGGAGATAAAGTATTTTAGCAACAAAAAAAATCAACACAAAAATAAAGTCAAAAATAGTGAAAAAATAGT
AAATTTGTCTAAAAAATTAAAGGTTAATTTTAATGTTGAAAAAAATTTAAAAAATAATGTCTCTAATTTTAAGGAAAAAA
AATTAAAAAGCAAAAATAAAAAAAATATTAGTCAAGTAAGAAAAGAAAATGAAATTAGTGTAAAAACTGAAAAAAAAACT
AAAATTTTAGCTAAAAATAATCAAAAACCGAAAAATGCTATTGAAAAATTAGATAATGAAAATTTTAAAGCTAAAGCTAT
AGAAAATAATAAAAAAATAGAATTTCGAAACTTAACTAAACGACGTTTGGGACGAATGGGGGTTATTTCTATAATTTATA
TTTGACAACTTTTTGACAAAAATATCGATATTAAAGAGATAAAAACAAAATATTTTGAACTAACAATTGACCAATTAAAG
TTGCTTAATTTTATAAAAAAAAATTATAGTTTTTTAAGAAAAGTTATTAATTTACAGTTAAAATCCAACTGAAATTGAGA
AAGAATTTTGCCATTAATTAGGTCAATTTTACTAGTAGGTGCCGCGGAGTTATTTTTTGTGCCTAGTCGAATTGTTTTTA
ATGAGGCAGTTGAGATAACTAAAATTTTTAGCATTGCTGGTGACAATGAATTTTGCTTTGTAAATGCTGTTTTACAAAAA
ATATACAATTATTATGAAATCAAAAATCTTTTTAGAAATTAA

Upstream 100 bases:

>100_bases
TTTTTCAATTTGTTTTGTTAAAATTCAAAAGAAGTAAAATTATAAACATCTAAATTTATTATTTAATTTGATCAAAATTA
ACTAAATAGAGCGGACTGAG

Downstream 100 bases:

>100_bases
AAATAAGTCCGAAATTAAGCGTTTTATTAAAAATGAAATGAAATTTAGAAATTATCGTCGAATTTTAGGTAAAAAATTCA
AATTTTTATTTTATAATTTA

Product: hypothetical protein

Products: NA

Alternate protein names: Transcription Anti-Termination Factor NusB; NusB Family Protein

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MKESEIKYFSNKKNQHKNKVKNSEKIVNLSKKLKVNFNVEKNLKNNVSNFKEKKLKSKNKKNISQVRKENEISVKTEKKT
KILAKNNQKPKNAIEKLDNENFKAKAIENNKKIEFRNLTKRRLGRMGVISIIYIWQLFDKNIDIKEIKTKYFELTIDQLK
LLNFIKKNYSFLRKVINLQLKSNWNWERILPLIRSILLVGAAELFFVPSRIVFNEAVEITKIFSIAGDNEFCFVNAVLQK
IYNYYEIKNLFRN

Sequences:

>Translated_253_residues
MKESEIKYFSNKKNQHKNKVKNSEKIVNLSKKLKVNFNVEKNLKNNVSNFKEKKLKSKNKKNISQVRKENEISVKTEKKT
KILAKNNQKPKNAIEKLDNENFKAKAIENNKKIEFRNLTKRRLGRMGVISIIYI*QLFDKNIDIKEIKTKYFELTIDQLK
LLNFIKKNYSFLRKVINLQLKSN*N*ERILPLIRSILLVGAAELFFVPSRIVFNEAVEITKIFSIAGDNEFCFVNAVLQK
IYNYYEIKNLFRN
>Mature_253_residues
MKESEIKYFSNKKNQHKNKVKNSEKIVNLSKKLKVNFNVEKNLKNNVSNFKEKKLKSKNKKNISQVRKENEISVKTEKKT
KILAKNNQKPKNAIEKLDNENFKAKAIENNKKIEFRNLTKRRLGRMGVISIIYI*QLFDKNIDIKEIKTKYFELTIDQLK
LLNFIKKNYSFLRKVINLQLKSN*N*ERILPLIRSILLVGAAELFFVPSRIVFNEAVEITKIFSIAGDNEFCFVNAVLQK
IYNYYEIKNLFRN

Specific function: Unknown

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29486; Mature: 29486

Theoretical pI: Translated: 10.80; Mature: 10.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKESEIKYFSNKKNQHKNKVKNSEKIVNLSKKLKVNFNVEKNLKNNVSNFKEKKLKSKNK
CCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHEEEEECCHHHHHHHHHHHHHHHHHCCCH
KNISQVRKENEISVKTEKKTKILAKNNQKPKNAIEKLDNENFKAKAIENNKKIEFRNLTK
HHHHHHHHCCCCEEEECHHHHHHHCCCCCHHHHHHHHCCCCCEEEEECCCCCCHHHHHHH
RRLGRMGVISIIYIQLFDKNIDIKEIKTKYFELTIDQLKLLNFIKKNYSFLRKVINLQLK
HHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SNNERILPLIRSILLVGAAELFFVPSRIVFNEAVEITKIFSIAGDNEFCFVNAVLQKIYN
CCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHH
YYEIKNLFRN
HHHHHHHHCC
>Mature Secondary Structure
MKESEIKYFSNKKNQHKNKVKNSEKIVNLSKKLKVNFNVEKNLKNNVSNFKEKKLKSKNK
CCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHEEEEECCHHHHHHHHHHHHHHHHHCCCH
KNISQVRKENEISVKTEKKTKILAKNNQKPKNAIEKLDNENFKAKAIENNKKIEFRNLTK
HHHHHHHHCCCCEEEECHHHHHHHCCCCCHHHHHHHHCCCCCEEEEECCCCCCHHHHHHH
RRLGRMGVISIIYIQLFDKNIDIKEIKTKYFELTIDQLKLLNFIKKNYSFLRKVINLQLK
HHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SNNERILPLIRSILLVGAAELFFVPSRIVFNEAVEITKIFSIAGDNEFCFVNAVLQKIYN
CCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHH
YYEIKNLFRN
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA