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The map label for this gene is DeoB

Identifier: 54020398

GI number: 54020398

Start: 248777

End: 250108

Strand: Reverse

Name: DeoB

Synonym: mhp221

Alternate gene names: 54020398

Gene position: 250108-248777 (Counterclockwise)

Preceding gene: 54020399

Following gene: 54020397

Centisome position: 28.02

GC content: 31.16

Gene sequence:

>1332_bases
TTGATTGGAGAACCGCAAGTCCGCAATCCCTTAAGTCTTTTTGCAAAAATAATTTCATTCTCTGTTGGAAATTATGATAA
AAATAGTAAAATTATAGAAAAAAGTGAAAAAAATAGGAAAAATAAAAGCAAAATTATGAAAAACTATAAATTTAAAAGAA
TTTTTTTAATTGTAACTGACTCGCTTGGAATTGGTGATGATGGTTTCCAAAAAAAATTTAATGATCAAGGCGCAAATACT
TTATATTCTGTCTCTAAAACTGGGGAACTAAAAATTCCTTTTTGAAAAAAAATGGGGATAGGAAATATCGCCAAAATTGA
AAATTTTGGCAAAAAAAATAAACAACCACTTGCTTATGTCTCAAAAATAATCGTAAAATCCAAAGCAAAAGATACTCTTG
CTGGCCATCTTGAAATGATGGGAATCGAAACTGTTAAGCCTAGCCCAAATTTTGATGATGGATTTCCAGATGAATTAATT
AATGAACTCCAAAAAGCCTTTGATAATCGTCAGATTATTGGTAATAAATCAATTAGTGGAACTGTTATTCTTGCAGAATT
AGGGCAAAAAGCAATTGATGAAAATAAAATAATTGTTTATACCTCACCAGATTCGACTTTACAAATTTGTGGACATGAGG
AAAAATTAGGGCTTGAAAATCTTTATCGGTATGCAAAAGCGGCCCGAAAAATTTGTAGCTCTCGGCCAGAATGAAATGTT
GCTCGTGTAATTGCAAGACCTTATATAGGTGAAAACGGAAATTTTAAACGCACCTTCAACCGGCATGATTATGCAAATAT
TCCGCCGAAATCAATTCTTGATTCCTTACAGAAAAACGGAATTGAAACTATTGGAATTGGAAAAATTGGGGATATTTTCT
CAAATCAAGGTCTAGATAAAATTTTTGGGCCTAATAGTGATGAAAATAATATGGATATCGCAATTGATATTGCAAGTCAA
GAAAGTGAAAATCAATTCATTTTTGTTAATTTAGTTGAATTTGACTCAAGTTATGGCCACCGTCGCGATGTTATGGGATA
TTGTCAAAATTTAAACAATTTTGATATTAAATTAGCTAAACTAACAAATGCCCTAAAAGATGATGATTTACTAATAATTT
CATCTGATCATGGAAATGATCCTTGTTTTCCCGGGACAAATCACACCCGCGAGGCGCTACCGCTTACAATTTTTTCAAAA
AAATTTAAATCAAAAACTAAAGAATTAAAAAATCCAATTTCTTCACTGGCCACAATCGGTAATTTAATTGCAAAAAATTT
TGGAATTGAAATGGCTGAAATTGGCGAAGATATTTTTGATTTCCTAGACTAA

Upstream 100 bases:

>100_bases
ACGCGTTCAAGATTTGCAATATTTATGCCATCATGTGAATAAAATGCCTTTGTTTTTAGGTCATTTATTGAGATTTTTTT
ATCATAAAAATGATAATAAA

Downstream 100 bases:

>100_bases
ATTATTAATATAAAAATTATACATAAAAAGAAAAAAGTTCTTTATTTTTATGTATAATTTTTAAATTTTAACTAATAAAA
TTGAAAAATTATGTTAAAAT

Product: phosphopentomutase

Products: NA

Alternate protein names: Phosphodeoxyribomutase [H]

Number of amino acids: Translated: 443; Mature: 443

Protein sequence:

>443_residues
MIGEPQVRNPLSLFAKIISFSVGNYDKNSKIIEKSEKNRKNKSKIMKNYKFKRIFLIVTDSLGIGDDGFQKKFNDQGANT
LYSVSKTGELKIPFWKKMGIGNIAKIENFGKKNKQPLAYVSKIIVKSKAKDTLAGHLEMMGIETVKPSPNFDDGFPDELI
NELQKAFDNRQIIGNKSISGTVILAELGQKAIDENKIIVYTSPDSTLQICGHEEKLGLENLYRYAKAARKICSSRPEWNV
ARVIARPYIGENGNFKRTFNRHDYANIPPKSILDSLQKNGIETIGIGKIGDIFSNQGLDKIFGPNSDENNMDIAIDIASQ
ESENQFIFVNLVEFDSSYGHRRDVMGYCQNLNNFDIKLAKLTNALKDDDLLIISSDHGNDPCFPGTNHTREALPLTIFSK
KFKSKTKELKNPISSLATIGNLIAKNFGIEMAEIGEDIFDFLD

Sequences:

>Translated_443_residues
MIGEPQVRNPLSLFAKIISFSVGNYDKNSKIIEKSEKNRKNKSKIMKNYKFKRIFLIVTDSLGIGDDGFQKKFNDQGANT
LYSVSKTGELKIPF*KKMGIGNIAKIENFGKKNKQPLAYVSKIIVKSKAKDTLAGHLEMMGIETVKPSPNFDDGFPDELI
NELQKAFDNRQIIGNKSISGTVILAELGQKAIDENKIIVYTSPDSTLQICGHEEKLGLENLYRYAKAARKICSSRPE*NV
ARVIARPYIGENGNFKRTFNRHDYANIPPKSILDSLQKNGIETIGIGKIGDIFSNQGLDKIFGPNSDENNMDIAIDIASQ
ESENQFIFVNLVEFDSSYGHRRDVMGYCQNLNNFDIKLAKLTNALKDDDLLIISSDHGNDPCFPGTNHTREALPLTIFSK
KFKSKTKELKNPISSLATIGNLIAKNFGIEMAEIGEDIFDFLD
>Mature_443_residues
MIGEPQVRNPLSLFAKIISFSVGNYDKNSKIIEKSEKNRKNKSKIMKNYKFKRIFLIVTDSLGIGDDGFQKKFNDQGANT
LYSVSKTGELKIPF*KKMGIGNIAKIENFGKKNKQPLAYVSKIIVKSKAKDTLAGHLEMMGIETVKPSPNFDDGFPDELI
NELQKAFDNRQIIGNKSISGTVILAELGQKAIDENKIIVYTSPDSTLQICGHEEKLGLENLYRYAKAARKICSSRPE*NV
ARVIARPYIGENGNFKRTFNRHDYANIPPKSILDSLQKNGIETIGIGKIGDIFSNQGLDKIFGPNSDENNMDIAIDIASQ
ESENQFIFVNLVEFDSSYGHRRDVMGYCQNLNNFDIKLAKLTNALKDDDLLIISSDHGNDPCFPGTNHTREALPLTIFSK
KFKSKTKELKNPISSLATIGNLIAKNFGIEMAEIGEDIFDFLD

Specific function: Phosphotransfer between the C1 and C5 carbon atoms of pentose [H]

COG id: COG1015

COG function: function code G; Phosphopentomutase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphopentomutase family [H]

Homologues:

Organism=Escherichia coli, GI1790843, Length=411, Percent_Identity=36.7396593673966, Blast_Score=250, Evalue=2e-67,
Organism=Escherichia coli, GI1789781, Length=408, Percent_Identity=24.0196078431373, Blast_Score=85, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017849
- InterPro:   IPR017850
- InterPro:   IPR010045
- InterPro:   IPR006124 [H]

Pfam domain/function: PF01676 Metalloenzyme [H]

EC number: =5.4.2.7 [H]

Molecular weight: Translated: 49245; Mature: 49245

Theoretical pI: Translated: 9.12; Mature: 9.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGEPQVRNPLSLFAKIISFSVGNYDKNSKIIEKSEKNRKNKSKIMKNYKFKRIFLIVTD
CCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEC
SLGIGDDGFQKKFNDQGANTLYSVSKTGELKIPFKKMGIGNIAKIENFGKKNKQPLAYVS
CCCCCCHHHHHHHCCCCCCEEEEECCCCCEECCHHHCCCCCHHHHHHHCCCCCCHHHHHH
KIIVKSKAKDTLAGHLEMMGIETVKPSPNFDDGFPDELINELQKAFDNRQIIGNKSISGT
HHHHHHCCHHHHHHHHHHEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEECCCCCCCE
VILAELGQKAIDENKIIVYTSPDSTLQICGHEEKLGLENLYRYAKAARKICSSRPENVAR
EEHHHHCHHHCCCCCEEEEECCCCEEEECCCHHHCCHHHHHHHHHHHHHHHCCCHHHHHH
VIARPYIGENGNFKRTFNRHDYANIPPKSILDSLQKNGIETIGIGKIGDIFSNQGLDKIF
HHHCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCEEECCCHHHHHHCCCCHHHC
GPNSDENNMDIAIDIASQESENQFIFVNLVEFDSSYGHRRDVMGYCQNLNNFDIKLAKLT
CCCCCCCCCEEEEEEECCCCCCCEEEEEEEECCCCCCCHHHHHHHHCCCCCCCEEHHHHH
NALKDDDLLIISSDHGNDPCFPGTNHTREALPLTIFSKKFKSKTKELKNPISSLATIGNL
HHCCCCCEEEEECCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAKNFGIEMAEIGEDIFDFLD
HHHHCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MIGEPQVRNPLSLFAKIISFSVGNYDKNSKIIEKSEKNRKNKSKIMKNYKFKRIFLIVTD
CCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEC
SLGIGDDGFQKKFNDQGANTLYSVSKTGELKIPFKKMGIGNIAKIENFGKKNKQPLAYVS
CCCCCCHHHHHHHCCCCCCEEEEECCCCCEECCHHHCCCCCHHHHHHHCCCCCCHHHHHH
KIIVKSKAKDTLAGHLEMMGIETVKPSPNFDDGFPDELINELQKAFDNRQIIGNKSISGT
HHHHHHCCHHHHHHHHHHEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEECCCCCCCE
VILAELGQKAIDENKIIVYTSPDSTLQICGHEEKLGLENLYRYAKAARKICSSRPENVAR
EEHHHHCHHHCCCCCEEEEECCCCEEEECCCHHHCCHHHHHHHHHHHHHHHCCCHHHHHH
VIARPYIGENGNFKRTFNRHDYANIPPKSILDSLQKNGIETIGIGKIGDIFSNQGLDKIF
HHHCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCEEECCCHHHHHHCCCCHHHC
GPNSDENNMDIAIDIASQESENQFIFVNLVEFDSSYGHRRDVMGYCQNLNNFDIKLAKLT
CCCCCCCCCEEEEEEECCCCCCCEEEEEEEECCCCCCCHHHHHHHHCCCCCCCEEHHHHH
NALKDDDLLIISSDHGNDPCFPGTNHTREALPLTIFSKKFKSKTKELKNPISSLATIGNL
HHCCCCCEEEEECCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAKNFGIEMAEIGEDIFDFLD
HHHHCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11353084 [H]