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The map label for this gene is rbsB [H]

Identifier: 54020363

GI number: 54020363

Start: 172715

End: 173920

Strand: Reverse

Name: rbsB [H]

Synonym: mhp145

Alternate gene names: 54020363

Gene position: 173920-172715 (Counterclockwise)

Preceding gene: 54020364

Following gene: 54020362

Centisome position: 19.48

GC content: 33.75

Gene sequence:

>1206_bases
ATGTCCAAATTATTTATTAGAACATTATATTGAGTACTTGGGCTTATCGCTGCGATTGCAATTTATTTTGGAACCGCTTT
TGGGATAGCTTCAAGGTCGAATACAACTGCCAAAGTTGCCCCAGTTGCTGTTGTTTTTTCAACAAGAAATAATCCTTTTT
TCCAAAATGTTGAAAAAGGGATTGAAACAGCAGCAAAAGAATTAGGAGTTGACTATGAAGTCTATGACTCAGAAAATGAC
TCGGATAAAGAAGCAAGAAATATTTCAAATATTATTGCAAAACAACAAAAAGTTGTAATTTTTAACGATGTTAATGAAGA
TTCAGGAATCTCAGCTGTTAAGAAATTAAATCAAGCTGGAATTCCGGTAATTGCAACTGACCATTTACTAAATTCGCCAA
AAGCTTTAGAAGCAAAAATCAAAGTTGAAGCCAATATTGCTTCTGATAATAAACAAGCAGGAGTAATTCTTGCCCAGTTT
ATGGCCCAAAAAATTGGACTTCCTCAAGATTCACTTACTTATTCAGTCTATGGAATTCCCGGAACTGAATCAGGTGAATC
CCGGGCACAAGGGTTTATTGAAACAGTTAAAAATCTAAATAATCAAGCAATAAAATACAACCTTTTTTCTTATGGAAAAT
ATGGAAAAGAAAATGCAAATGGAAAAACTTACATCGGAAGACAAGCTGATGATAATCGCGATCTAGCAAATCAAAGAGTT
GCAAATGATGCAACGCAAGTATTCCAAGATGCTCAAAAAAGGCCACTTTTGGTTTTTGGGACTAATGATGAAGCTGCCTT
AGGTTCAATTTCTGCCCTTGAAAGCGCCCAGATTCCATTAGGAGGTGGAGATAAATTCCTTCCAGGTTCAGGAAAAGTTT
ATATTACCGGAGTTGATTATACAAATGATGCTCAAAAAGCGGTATTAAATAATAAATTATCAGCAACTGTTGAACAAGAT
ACTGATCTTTTAGGAAGACTTTCTTTAATAATTGCAGAAAAAATTCTTAAAGATCAATGAAAAACAAGTAAATATTCTGA
TTTTTATTCACAATTTCCTCAGCTTGATAAAGATAAAAATCCTGATGATCAAGTTGAGCAAGGATATTATTTTAAAGTAG
GAACAAAACTTTTCTGGAAAGGCCCAGATGGAAAAGGTGAAAAACTTCAAGCCGATGAAAATGGGATACTCCAAAAGGTA
AATTAA

Upstream 100 bases:

>100_bases
GCAATTCTTTTTGATCAAAAATATCATATCAATGAAAGATTATCCAAACTTTATTACAAAGTTTTAGTAAAAATTTAGAA
AGGAAAAATTTAAAACTTTT

Downstream 100 bases:

>100_bases
TCTATAAAAACAAGGATAATTTATGAAAAAAGCAAAAATTAAAGTCGGGATTTTAGGACTAGGACGAATGGGTCTAAGCC
ATGCTGAAAACCTTTTAGAT

Product: periplasmic sugar-binding proteins

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 400

Protein sequence:

>401_residues
MSKLFIRTLYWVLGLIAAIAIYFGTAFGIASRSNTTAKVAPVAVVFSTRNNPFFQNVEKGIETAAKELGVDYEVYDSEND
SDKEARNISNIIAKQQKVVIFNDVNEDSGISAVKKLNQAGIPVIATDHLLNSPKALEAKIKVEANIASDNKQAGVILAQF
MAQKIGLPQDSLTYSVYGIPGTESGESRAQGFIETVKNLNNQAIKYNLFSYGKYGKENANGKTYIGRQADDNRDLANQRV
ANDATQVFQDAQKRPLLVFGTNDEAALGSISALESAQIPLGGGDKFLPGSGKVYITGVDYTNDAQKAVLNNKLSATVEQD
TDLLGRLSLIIAEKILKDQWKTSKYSDFYSQFPQLDKDKNPDDQVEQGYYFKVGTKLFWKGPDGKGEKLQADENGILQKV
N

Sequences:

>Translated_401_residues
MSKLFIRTLY*VLGLIAAIAIYFGTAFGIASRSNTTAKVAPVAVVFSTRNNPFFQNVEKGIETAAKELGVDYEVYDSEND
SDKEARNISNIIAKQQKVVIFNDVNEDSGISAVKKLNQAGIPVIATDHLLNSPKALEAKIKVEANIASDNKQAGVILAQF
MAQKIGLPQDSLTYSVYGIPGTESGESRAQGFIETVKNLNNQAIKYNLFSYGKYGKENANGKTYIGRQADDNRDLANQRV
ANDATQVFQDAQKRPLLVFGTNDEAALGSISALESAQIPLGGGDKFLPGSGKVYITGVDYTNDAQKAVLNNKLSATVEQD
TDLLGRLSLIIAEKILKDQ*KTSKYSDFYSQFPQLDKDKNPDDQVEQGYYFKVGTKLFWKGPDGKGEKLQADENGILQKV
N
>Mature_400_residues
SKLFIRTLY*VLGLIAAIAIYFGTAFGIASRSNTTAKVAPVAVVFSTRNNPFFQNVEKGIETAAKELGVDYEVYDSENDS
DKEARNISNIIAKQQKVVIFNDVNEDSGISAVKKLNQAGIPVIATDHLLNSPKALEAKIKVEANIASDNKQAGVILAQFM
AQKIGLPQDSLTYSVYGIPGTESGESRAQGFIETVKNLNNQAIKYNLFSYGKYGKENANGKTYIGRQADDNRDLANQRVA
NDATQVFQDAQKRPLLVFGTNDEAALGSISALESAQIPLGGGDKFLPGSGKVYITGVDYTNDAQKAVLNNKLSATVEQDT
DLLGRLSLIIAEKILKDQ*KTSKYSDFYSQFPQLDKDKNPDDQVEQGYYFKVGTKLFWKGPDGKGEKLQADENGILQKVN

Specific function: Involved in the high-affinity D-ribose membrane transport system and also serves as the primary chemoreceptor for chemotaxis [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790192, Length=304, Percent_Identity=31.9078947368421, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI1790526, Length=329, Percent_Identity=26.1398176291793, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 43501; Mature: 43370

Theoretical pI: Translated: 5.62; Mature: 5.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.2 %Met     (Mature Protein)
0.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKLFIRTLYVLGLIAAIAIYFGTAFGIASRSNTTAKVAPVAVVFSTRNNPFFQNVEKGI
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEECCCCCHHHHHHHHH
ETAAKELGVDYEVYDSENDSDKEARNISNIIAKQQKVVIFNDVNEDSGISAVKKLNQAGI
HHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCC
PVIATDHLLNSPKALEAKIKVEANIASDNKQAGVILAQFMAQKIGLPQDSLTYSVYGIPG
CEEEEHHHHCCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCC
TESGESRAQGFIETVKNLNNQAIKYNLFSYGKYGKENANGKTYIGRQADDNRDLANQRVA
CCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCEEECCCCCCCHHHHHHHHH
NDATQVFQDAQKRPLLVFGTNDEAALGSISALESAQIPLGGGDKFLPGSGKVYITGVDYT
HHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCC
NDAQKAVLNNKLSATVEQDTDLLGRLSLIIAEKILKDQKTSKYSDFYSQFPQLDKDKNPD
CCHHHHHHCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCC
DQVEQGYYFKVGTKLFWKGPDGKGEKLQADENGILQKVN
HHHHCCEEEEECCEEEEECCCCCCCEEECCCCCCCEECC
>Mature Secondary Structure 
SKLFIRTLYVLGLIAAIAIYFGTAFGIASRSNTTAKVAPVAVVFSTRNNPFFQNVEKGI
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEECCCCCHHHHHHHHH
ETAAKELGVDYEVYDSENDSDKEARNISNIIAKQQKVVIFNDVNEDSGISAVKKLNQAGI
HHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCC
PVIATDHLLNSPKALEAKIKVEANIASDNKQAGVILAQFMAQKIGLPQDSLTYSVYGIPG
CEEEEHHHHCCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCC
TESGESRAQGFIETVKNLNNQAIKYNLFSYGKYGKENANGKTYIGRQADDNRDLANQRVA
CCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCEEECCCCCCCHHHHHHHHH
NDATQVFQDAQKRPLLVFGTNDEAALGSISALESAQIPLGGGDKFLPGSGKVYITGVDYT
HHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCC
NDAQKAVLNNKLSATVEQDTDLLGRLSLIIAEKILKDQKTSKYSDFYSQFPQLDKDKNPD
CCHHHHHHCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCC
DQVEQGYYFKVGTKLFWKGPDGKGEKLQADENGILQKVN
HHHHCCEEEEECCEEEEECCCCCCCEEECCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 6313683; 7686882; 9278503; 3011793; 3011794; 8899705; 9298646; 1583688; 7982928; 9641984 [H]