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The map label for this gene is rbsC

Identifier: 54020364

GI number: 54020364

Start: 173943

End: 175757

Strand: Reverse

Name: rbsC

Synonym: mhp146

Alternate gene names: 54020364

Gene position: 175757-173943 (Counterclockwise)

Preceding gene: 54020365

Following gene: 54020363

Centisome position: 19.69

GC content: 29.92

Gene sequence:

>1815_bases
ATGGTAAAAGTCTGTAGCAAATTGAAAAAAGAACATCATTTTGAGTTTGTCGATTCACTTGATTTTTTCTCCCGGGAAGC
AAAAATTGCCGAGATAAGAAGTTATTATAAAAAAAGAATCGAATTTAACCAAGAAAAATTAGATACAGCAATTTATGCCT
GACATGATGATTTTTTTAACCTTAAAGTCTCAACTGATGATCGAAAGGATTTTATTGAAAAAAAAGCCCAAAAACAAATT
AGACTTGCTCAAAAAGCCTTAGAAAATCTTGAGAATCAATATCTAAATTTAGCTCTCGATCAAGCAAGTTTTGAATCCCA
AAAAATTCATCTACAAAAGCAGATTGATCAACAAATTAAAGAAATTAAAACTAAGGCCGAAGCTAAAAAACGTAAAGCGA
ATGAATTTTTAGAAAAACAGCGAGTTAAATACGAAAAAGAGATCGCTAAAAAAGAAGCTCTCCATAAAAATTTTATGGAT
TATATTCATCAAGATTCCAAGAATCAAATCAATAAAATAAGCAAACAATTTCAGCAAATTGTTGAAACCGATCCAAGTTT
TTTTAGCTCAAGACAAGAAAAACTTGCCCAAGATCTAAGAGTTCTTAATCGTCATACAAAAGCAAAATTAGAAACTTTAG
AATCAGATTTTTCTCTACGAAAAATTGGAAAAAATACTTTTTTAGATCAGAAGAAAAATATTGAATTATCCTATCTAAAA
GAAGTAAAAATGCTGCAAAAACAAGCACAAATGGTTCATCCAAAAATGAGAATGGCTACAAAAATCTGAAACTTTTTAAA
ATTCAGAGAACAAGATCGGTTCATTAACAATGTTGAAAGAGCCAAAAAATCCTTAAATAATACAAAATTATTAATTTTGT
TTTTAATTATCGCCTTTATTACCGGAGCTTTAAATGTTAATTTTTTTAGTTCTTATAACTGATTTGTTGCGATCTTAAAA
AATAATATTTTTATTGGATTTATCGCCTTAGGTCAAACTTTAGTGATTCTAACCGGCGGAATTGATCTTTCAGTTGGTTC
TCTAATTGGTTTTGGCGCCACGATTTACCTGCTTTTAACGGTTAAATTAGGACTTCATTTTGTTGCTGTCTTATTTATTT
TGATCATTATTTTAGCTGCAATAGGAATTTTAAATGGAATTTTGATCTCAAAATTTAAAATTCCACCTTTTATTGTCACT
CTTGCCGGACTTTTATCACTTCGAGGGGCGATTGCGATTTTATTAAAAGGAACACCAATCACTAATGCTCAAGATCCAAT
TTTTAATTTTTTTAACTATAATTTAGGCTCTAATTTCTCGGTTTTGGTTCTTGTATTTATTATCACCGTTGCAGTTTTAA
TCTTTTTTATTAAGTTTTCAAAATTTGGAAGATATGTCTATGCTGTTGGTGATAATCCAGTTGCAGCTACATTTTCAGGG
ATTAAAAATAATAAAATTTTAATTTTAGTTTATATGTTTTCCGGAATCTTTGCGATTTTAGGTGCCCTTTCAATCTCATC
TGGGACAACTTCGGTATCTCCTAATACCGGTTATGGTTTTGAACTTGATACTGTAACCGCCGTTGTTTTAGGGGGAACAG
CTCTTACTGGTGGAAAAGGAGGGGTTGGAAAAACGATTATTGGATGGTTTGCAATGGCTTTATTATTAAATACCTTCTCA
TTTTTCCAATTAGACTCTAACTTCCAGTTAGTCGCAAAAGGAATTATTATTGTCCTTGCAATTCTTTTTGATCAAAAATA
TCATATCAATGAAAGATTATCCAAACTTTATTACAAAGTTTTAGTAAAAATTTAG

Upstream 100 bases:

>100_bases
TACAATGTATGAAGGCAGAATTACAAGTGAATTAGTTGGCCCGCAAATTACCGATCAAAATATAATGAAATATTCACTTA
ATTTATAGAAAGGAAATTAG

Downstream 100 bases:

>100_bases
AAAGGAAAAATTTAAAACTTTTATGTCCAAATTATTTATTAGAACATTATATTGAGTACTTGGGCTTATCGCTGCGATTG
CAATTTATTTTGGAACCGCT

Product: putative ribose ABC transporter

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 604; Mature: 604

Protein sequence:

>604_residues
MVKVCSKLKKEHHFEFVDSLDFFSREAKIAEIRSYYKKRIEFNQEKLDTAIYAWHDDFFNLKVSTDDRKDFIEKKAQKQI
RLAQKALENLENQYLNLALDQASFESQKIHLQKQIDQQIKEIKTKAEAKKRKANEFLEKQRVKYEKEIAKKEALHKNFMD
YIHQDSKNQINKISKQFQQIVETDPSFFSSRQEKLAQDLRVLNRHTKAKLETLESDFSLRKIGKNTFLDQKKNIELSYLK
EVKMLQKQAQMVHPKMRMATKIWNFLKFREQDRFINNVERAKKSLNNTKLLILFLIIAFITGALNVNFFSSYNWFVAILK
NNIFIGFIALGQTLVILTGGIDLSVGSLIGFGATIYLLLTVKLGLHFVAVLFILIIILAAIGILNGILISKFKIPPFIVT
LAGLLSLRGAIAILLKGTPITNAQDPIFNFFNYNLGSNFSVLVLVFIITVAVLIFFIKFSKFGRYVYAVGDNPVAATFSG
IKNNKILILVYMFSGIFAILGALSISSGTTSVSPNTGYGFELDTVTAVVLGGTALTGGKGGVGKTIIGWFAMALLLNTFS
FFQLDSNFQLVAKGIIIVLAILFDQKYHINERLSKLYYKVLVKI

Sequences:

>Translated_604_residues
MVKVCSKLKKEHHFEFVDSLDFFSREAKIAEIRSYYKKRIEFNQEKLDTAIYA*HDDFFNLKVSTDDRKDFIEKKAQKQI
RLAQKALENLENQYLNLALDQASFESQKIHLQKQIDQQIKEIKTKAEAKKRKANEFLEKQRVKYEKEIAKKEALHKNFMD
YIHQDSKNQINKISKQFQQIVETDPSFFSSRQEKLAQDLRVLNRHTKAKLETLESDFSLRKIGKNTFLDQKKNIELSYLK
EVKMLQKQAQMVHPKMRMATKI*NFLKFREQDRFINNVERAKKSLNNTKLLILFLIIAFITGALNVNFFSSYN*FVAILK
NNIFIGFIALGQTLVILTGGIDLSVGSLIGFGATIYLLLTVKLGLHFVAVLFILIIILAAIGILNGILISKFKIPPFIVT
LAGLLSLRGAIAILLKGTPITNAQDPIFNFFNYNLGSNFSVLVLVFIITVAVLIFFIKFSKFGRYVYAVGDNPVAATFSG
IKNNKILILVYMFSGIFAILGALSISSGTTSVSPNTGYGFELDTVTAVVLGGTALTGGKGGVGKTIIGWFAMALLLNTFS
FFQLDSNFQLVAKGIIIVLAILFDQKYHINERLSKLYYKVLVKI
>Mature_604_residues
MVKVCSKLKKEHHFEFVDSLDFFSREAKIAEIRSYYKKRIEFNQEKLDTAIYA*HDDFFNLKVSTDDRKDFIEKKAQKQI
RLAQKALENLENQYLNLALDQASFESQKIHLQKQIDQQIKEIKTKAEAKKRKANEFLEKQRVKYEKEIAKKEALHKNFMD
YIHQDSKNQINKISKQFQQIVETDPSFFSSRQEKLAQDLRVLNRHTKAKLETLESDFSLRKIGKNTFLDQKKNIELSYLK
EVKMLQKQAQMVHPKMRMATKI*NFLKFREQDRFINNVERAKKSLNNTKLLILFLIIAFITGALNVNFFSSYN*FVAILK
NNIFIGFIALGQTLVILTGGIDLSVGSLIGFGATIYLLLTVKLGLHFVAVLFILIIILAAIGILNGILISKFKIPPFIVT
LAGLLSLRGAIAILLKGTPITNAQDPIFNFFNYNLGSNFSVLVLVFIITVAVLIFFIKFSKFGRYVYAVGDNPVAATFSG
IKNNKILILVYMFSGIFAILGALSISSGTTSVSPNTGYGFELDTVTAVVLGGTALTGGKGGVGKTIIGWFAMALLLNTFS
FFQLDSNFQLVAKGIIIVLAILFDQKYHINERLSKLYYKVLVKI

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=307, Percent_Identity=34.8534201954397, Blast_Score=150, Evalue=2e-37,
Organism=Escherichia coli, GI1788896, Length=317, Percent_Identity=29.9684542586751, Blast_Score=122, Evalue=8e-29,
Organism=Escherichia coli, GI87082395, Length=279, Percent_Identity=35.4838709677419, Blast_Score=118, Evalue=1e-27,
Organism=Escherichia coli, GI1790524, Length=300, Percent_Identity=28.6666666666667, Blast_Score=90, Evalue=5e-19,
Organism=Escherichia coli, GI145693152, Length=266, Percent_Identity=29.6992481203008, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI145693214, Length=224, Percent_Identity=32.1428571428571, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1789992, Length=133, Percent_Identity=36.0902255639098, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1787794, Length=258, Percent_Identity=32.1705426356589, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1787793, Length=204, Percent_Identity=31.8627450980392, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI1788471, Length=220, Percent_Identity=29.5454545454545, Blast_Score=74, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 68090; Mature: 68090

Theoretical pI: Translated: 10.39; Mature: 10.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKVCSKLKKEHHFEFVDSLDFFSREAKIAEIRSYYKKRIEFNQEKLDTAIYAHDDFFNL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHEEEECCEEEE
KVSTDDRKDFIEKKAQKQIRLAQKALENLENQYLNLALDQASFESQKIHLQKQIDQQIKE
EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
IKTKAEAKKRKANEFLEKQRVKYEKEIAKKEALHKNFMDYIHQDSKNQINKISKQFQQIV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
ETDPSFFSSRQEKLAQDLRVLNRHTKAKLETLESDFSLRKIGKNTFLDQKKNIELSYLKE
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCHHCCCCCCCCHHHHHHH
VKMLQKQAQMVHPKMRMATKINFLKFREQDRFINNVERAKKSLNNTKLLILFLIIAFITG
HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
ALNVNFFSSYNFVAILKNNIFIGFIALGQTLVILTGGIDLSVGSLIGFGATIYLLLTVKL
HCCEEEECCCCEEEEEECCEEEEEHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
GLHFVAVLFILIIILAAIGILNGILISKFKIPPFIVTLAGLLSLRGAIAILLKGTPITNA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEEEEECCCCCCC
QDPIFNFFNYNLGSNFSVLVLVFIITVAVLIFFIKFSKFGRYVYAVGDNPVAATFSGIKN
CCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHCCCCC
NKILILVYMFSGIFAILGALSISSGTTSVSPNTGYGFELDTVTAVVLGGTALTGGKGGVG
CCEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEHHHHHHHHCCCCEECCCCCCCC
KTIIGWFAMALLLNTFSFFQLDSNFQLVAKGIIIVLAILFDQKYHINERLSKLYYKVLVK
HHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
I
C
>Mature Secondary Structure
MVKVCSKLKKEHHFEFVDSLDFFSREAKIAEIRSYYKKRIEFNQEKLDTAIYAHDDFFNL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHEEEECCEEEE
KVSTDDRKDFIEKKAQKQIRLAQKALENLENQYLNLALDQASFESQKIHLQKQIDQQIKE
EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
IKTKAEAKKRKANEFLEKQRVKYEKEIAKKEALHKNFMDYIHQDSKNQINKISKQFQQIV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
ETDPSFFSSRQEKLAQDLRVLNRHTKAKLETLESDFSLRKIGKNTFLDQKKNIELSYLKE
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCHHCCCCCCCCHHHHHHH
VKMLQKQAQMVHPKMRMATKINFLKFREQDRFINNVERAKKSLNNTKLLILFLIIAFITG
HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
ALNVNFFSSYNFVAILKNNIFIGFIALGQTLVILTGGIDLSVGSLIGFGATIYLLLTVKL
HCCEEEECCCCEEEEEECCEEEEEHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
GLHFVAVLFILIIILAAIGILNGILISKFKIPPFIVTLAGLLSLRGAIAILLKGTPITNA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEEEEECCCCCCC
QDPIFNFFNYNLGSNFSVLVLVFIITVAVLIFFIKFSKFGRYVYAVGDNPVAATFSGIKN
CCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHCCCCC
NKILILVYMFSGIFAILGALSISSGTTSVSPNTGYGFELDTVTAVVLGGTALTGGKGGVG
CCEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEHHHHHHHHCCCCEECCCCCCCC
KTIIGWFAMALLLNTFSFFQLDSNFQLVAKGIIIVLAILFDQKYHINERLSKLYYKVLVK
HHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
I
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]