Definition | Mycoplasma hyopneumoniae 232, complete genome. |
---|---|
Accession | NC_006360 |
Length | 892,758 |
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The map label for this gene is rsmD [H]
Identifier: 54020103
GI number: 54020103
Start: 255385
End: 255945
Strand: Direct
Name: rsmD [H]
Synonym: mhp228
Alternate gene names: 54020103
Gene position: 255385-255945 (Clockwise)
Preceding gene: 54020102
Following gene: 54020104
Centisome position: 28.61
GC content: 28.88
Gene sequence:
>561_bases ATGATTAGAATTATTTCCGGAAATTATCGTGGTGCGGTTATTAAAAATCCTGAATTTTCAGTGGTGCGTCCAATGTCTAG TCGTTGTCGTGAAGCAATTTTTTCCCAACTTCAATTTGAAATTCCTAATTCTAAGGTGCTTGATTTATTTGCCGGTACTG GAGCGATTGGGCTGGAGGCGACTTCTCGTGGCGCTAAAAAGGTGATAGCAACCGAATTAAACCAAAAAGCTTACCAAAAT ATAGTAGATTTTTGTAAAAAATATAATATTAAAAATTATCAAATTTTTAATAAAAGTGCAATTTTTTTAATTAATGATCT TAAAAATAAAAAATTTGACTTCATTTTCCTAGATCCTCCCCATAGTGAAGAAGAAATTACAAAAAAATGTTTCTGAAAAA TTGCAGAAAATAATTTATTAGCAAAAAATGGACTTATAATTTATAAAACAAATTTAGGCTCTAAACTAATTCCGGGCATT TTTTCAATCCATCAAATAAAAAAATATGGTAAAAACAGCGTTTTTTTCCTAAAATATTACAATGAAGGTAAAAATGAGTA A
Upstream 100 bases:
>100_bases ATTTTTATTATATTTATTCTTTGTTTGATGTTTTAAAATTATTTTTAAATAAAAATTCATACATTTTTCTATAAACTTTT GGTATAATTTTTAAAAATTT
Downstream 100 bases:
>100_bases ATTAATAATTTTGTCTGGACCTTCAGGGGTTGGCAAGGGCACAATTGAATCACTTTTATTAAAAAATAAAAATTTATTAA TAAAGTTAGCAATTTCTGCA
Product: hypothetical protein
Products: NA
Alternate protein names: 16S rRNA m2G966 methyltransferase; rRNA (guanine-N(2)-)-methyltransferase [H]
Number of amino acids: Translated: 186; Mature: 186
Protein sequence:
>186_residues MIRIISGNYRGAVIKNPEFSVVRPMSSRCREAIFSQLQFEIPNSKVLDLFAGTGAIGLEATSRGAKKVIATELNQKAYQN IVDFCKKYNIKNYQIFNKSAIFLINDLKNKKFDFIFLDPPHSEEEITKKCFWKIAENNLLAKNGLIIYKTNLGSKLIPGI FSIHQIKKYGKNSVFFLKYYNEGKNE
Sequences:
>Translated_186_residues MIRIISGNYRGAVIKNPEFSVVRPMSSRCREAIFSQLQFEIPNSKVLDLFAGTGAIGLEATSRGAKKVIATELNQKAYQN IVDFCKKYNIKNYQIFNKSAIFLINDLKNKKFDFIFLDPPHSEEEITKKCF*KIAENNLLAKNGLIIYKTNLGSKLIPGI FSIHQIKKYGKNSVFFLKYYNEGKNE >Mature_186_residues MIRIISGNYRGAVIKNPEFSVVRPMSSRCREAIFSQLQFEIPNSKVLDLFAGTGAIGLEATSRGAKKVIATELNQKAYQN IVDFCKKYNIKNYQIFNKSAIFLINDLKNKKFDFIFLDPPHSEEEITKKCF*KIAENNLLAKNGLIIYKTNLGSKLIPGI FSIHQIKKYGKNSVFFLKYYNEGKNE
Specific function: Specifically methylates the guanosine in position 966 of 16S rRNA in the assembled 30S particle [H]
COG id: COG0742
COG function: function code L; N6-adenine-specific methylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the methyltransferase superfamily. RsmD family [H]
Homologues:
Organism=Escherichia coli, GI1789875, Length=186, Percent_Identity=29.5698924731183, Blast_Score=93, Evalue=8e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002052 - InterPro: IPR004398 [H]
Pfam domain/function: PF03602 Cons_hypoth95 [H]
EC number: =2.1.1.171 [H]
Molecular weight: Translated: 21112; Mature: 21112
Theoretical pI: Translated: 10.20; Mature: 10.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIRIISGNYRGAVIKNPEFSVVRPMSSRCREAIFSQLQFEIPNSKVLDLFAGTGAIGLEA CEEEEECCCCEEEEECCCCEEECCHHHHHHHHHHHHHEEECCCCCEEEEEECCCCEEECC TSRGAKKVIATELNQKAYQNIVDFCKKYNIKNYQIFNKSAIFLINDLKNKKFDFIFLDPP CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEEECCCCCCCCEEEECCC HSEEEITKKCFKIAENNLLAKNGLIIYKTNLGSKLIPGIFSIHQIKKYGKNSVFFLKYYN CCHHHHHHHHHHHHCCCEEECCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEEC EGKNE CCCCC >Mature Secondary Structure MIRIISGNYRGAVIKNPEFSVVRPMSSRCREAIFSQLQFEIPNSKVLDLFAGTGAIGLEA CEEEEECCCCEEEEECCCCEEECCHHHHHHHHHHHHHEEECCCCCEEEEEECCCCEEECC TSRGAKKVIATELNQKAYQNIVDFCKKYNIKNYQIFNKSAIFLINDLKNKKFDFIFLDPP CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEEECCCCCCCCEEEECCC HSEEEITKKCFKIAENNLLAKNGLIIYKTNLGSKLIPGIFSIHQIKKYGKNSVFFLKYYN CCHHHHHHHHHHHHCCCEEECCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEEC EGKNE CCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12471157 [H]