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The map label for this gene is jag [H]

Identifier: 52788048

GI number: 52788048

Start: 4220151

End: 4220774

Strand: Reverse

Name: jag [H]

Synonym: BLi04376

Alternate gene names: 52788048

Gene position: 4220774-4220151 (Counterclockwise)

Preceding gene: 52788049

Following gene: 52788047

Centisome position: 99.96

GC content: 47.28

Gene sequence:

>624_bases
GTGAAGGAACTGACTGCTACTGGACGTACCGTCGATGAAGCAGTGCAATCCGGGCTTGAACAGCTGGGCCTTCATGCAGA
TGATGTCGAAGTCGACGTAGTTGATGAAGGAAAAAAGGGATTATTCGGCATTTTCGGTCATCGGTCTGCAGTCGTGAACA
TTCGGGAAAAAATAGACCCGGTTAAAGAAGCAAAACAATATTTGGAAAATGTAATTTCGAATATGGGAATACAAGCCCAG
GTGACGGCAGAAGAGGAGTCTAAACGAGTGGTTTTTCAGTTGAAAGGAGACAAAACAGCTCTTTTAATTGGAAAAAGGGG
ACAAACTTTAAATGCCCTTGAAACGCTGACGCAGCTCGTGCTCAATCGTCATTCCGACAGATATATCCAAGCGGTGGTTG
ACGCCGAAGGATACCGCGCAAAGCGGAAGGAAACACTTGCTCAGCTGGCATTGAAGCTTGCTGACCAGGCGGCCAGGCAG
AAAAAAGACATTCACCTGGAGCCGATGCCTTCCAGTGAGCGCAAGGTCATCCATGATACGCTTGCGGGCTACTCGCAGCA
TATCGAAACTTACTCTACCGGTGAAGACCATAACCGGCACCTTGTCATCTCATATAAAAAATAA

Upstream 100 bases:

>100_bases
TATTCATGATTGCTCAAACCTTCTTTATCAAAGGGCCTGATCTAAAGGCTGAGAGACAGGAAGCGGCAGCCGGAGGAAAA
AAATCCGGAGGTAAGAAAAA

Downstream 100 bases:

>100_bases
CATGAAAACCGAAGTTCCCAAAATTGGGGCTTCGGTTTTTTTGCCGTTGAAAATCGATGAAATGCAGCAAAATCAGTTTA
AGTTCTATTTTTTCAGGCGT

Product: hypothetical protein

Products: NA

Alternate protein names: SpoIIIJ-associated protein [H]

Number of amino acids: Translated: 207; Mature: 207

Protein sequence:

>207_residues
MKELTATGRTVDEAVQSGLEQLGLHADDVEVDVVDEGKKGLFGIFGHRSAVVNIREKIDPVKEAKQYLENVISNMGIQAQ
VTAEEESKRVVFQLKGDKTALLIGKRGQTLNALETLTQLVLNRHSDRYIQAVVDAEGYRAKRKETLAQLALKLADQAARQ
KKDIHLEPMPSSERKVIHDTLAGYSQHIETYSTGEDHNRHLVISYKK

Sequences:

>Translated_207_residues
MKELTATGRTVDEAVQSGLEQLGLHADDVEVDVVDEGKKGLFGIFGHRSAVVNIREKIDPVKEAKQYLENVISNMGIQAQ
VTAEEESKRVVFQLKGDKTALLIGKRGQTLNALETLTQLVLNRHSDRYIQAVVDAEGYRAKRKETLAQLALKLADQAARQ
KKDIHLEPMPSSERKVIHDTLAGYSQHIETYSTGEDHNRHLVISYKK
>Mature_207_residues
MKELTATGRTVDEAVQSGLEQLGLHADDVEVDVVDEGKKGLFGIFGHRSAVVNIREKIDPVKEAKQYLENVISNMGIQAQ
VTAEEESKRVVFQLKGDKTALLIGKRGQTLNALETLTQLVLNRHSDRYIQAVVDAEGYRAKRKETLAQLALKLADQAARQ
KKDIHLEPMPSSERKVIHDTLAGYSQHIETYSTGEDHNRHLVISYKK

Specific function: Unknown

COG id: COG1847

COG function: function code R; Predicted RNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 R3H domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004087
- InterPro:   IPR015946
- InterPro:   IPR001374 [H]

Pfam domain/function: PF01424 R3H [H]

EC number: NA

Molecular weight: Translated: 23141; Mature: 23141

Theoretical pI: Translated: 7.32; Mature: 7.32

Prosite motif: PS51061 R3H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKELTATGRTVDEAVQSGLEQLGLHADDVEVDVVDEGKKGLFGIFGHRSAVVNIREKIDP
CCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEECCCCHHEEEHHHHCCH
VKEAKQYLENVISNMGIQAQVTAEEESKRVVFQLKGDKTALLIGKRGQTLNALETLTQLV
HHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCEEEEEECCCCCHHHHHHHHHHH
LNRHSDRYIQAVVDAEGYRAKRKETLAQLALKLADQAARQKKDIHLEPMPSSERKVIHDT
HHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHH
LAGYSQHIETYSTGEDHNRHLVISYKK
HHHHHHHHHHCCCCCCCCCEEEEEECC
>Mature Secondary Structure
MKELTATGRTVDEAVQSGLEQLGLHADDVEVDVVDEGKKGLFGIFGHRSAVVNIREKIDP
CCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEECCCCHHEEEHHHHCCH
VKEAKQYLENVISNMGIQAQVTAEEESKRVVFQLKGDKTALLIGKRGQTLNALETLTQLV
HHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCEEEEEECCCCCHHHHHHHHHHH
LNRHSDRYIQAVVDAEGYRAKRKETLAQLALKLADQAARQKKDIHLEPMPSSERKVIHDT
HHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHH
LAGYSQHIETYSTGEDHNRHLVISYKK
HHHHHHHHHHCCCCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1487728; 1552862; 7584024; 9384377 [H]