Click here to switch to the map view.

The map label for this gene is araQ [H]

Identifier: 52786752

GI number: 52786752

Start: 2907117

End: 2907959

Strand: Reverse

Name: araQ [H]

Synonym: BLi03022

Alternate gene names: 52786752

Gene position: 2907959-2907117 (Counterclockwise)

Preceding gene: 52786753

Following gene: 52786751

Centisome position: 68.87

GC content: 47.81

Gene sequence:

>843_bases
ATGCGTCCTGCCGGAGGCCTCAACATTGCGAAAGTAGCTCTGTTTCTGCTGTTTGCGATATTAAGCTTTTTGTTTGTGTT
TCCGCTCTTCTGCCTTGTACTCGGCTCGCTCAAGCCATCTTCGGAATTGCTGCGCTTCGGCCTGAATTTAAAGCTGAGCC
CTGAAATCCTGAGCCTTGACAATTACACTTACTTGTTTAACGGAGGCAGCATTTATTTTCAATGGTTTTCGAACAGCTTG
ATTCTCGTGGTGATATCCACCGTGCTGACGCTCTTGTTTTCTTCAATGGTCGGATACGGGCTTGCCGTCTACGACTTTAA
AGGAAAAAATCTCTTGTTCGTAGCCGTGCTCCTGATCATGATGGTGCCGATCGAAATTCTCATGCTGCCTTTGTTTAAAA
TGACGGTTTCTCTTCATATTGTCGACACATACGCCGGTGTGATCCTGCCGTTTATCGTCTCGCCTGTAGCCGTGTTTTTC
TTCAGACAGTATGCGCTCGGCCTGCCGAGAGATTTGCTTGATTCCGCGAGAATGGACGGCTGCACAGAGTTCGGCATTTA
CTTCAGGATCATGGCGCCCTTGATGAAGCCGGCATTTGGAGCGATGATCATTCTTCAATCCTTAAACAGCTGGAACAACT
TCTTATGGCCGCTGATCGTTTTGCGATCGAAAGAAATGTTTACGCTCCCAATCGGACTGTCCGCTTTGCTCAGTCCGTAC
GGGAACAATTATGACATGTTGATTTCGGGTTCTGTGCTGGCGATTCTGCCCGTGATTCTCATCTTCCTGTTCTTCCAGAA
GTACTTTATATCAGGTTTGACGGCGGGCGGAATCAAAGGCTGA

Upstream 100 bases:

>100_bases
GCTACGGATCGGCGCTCGGCATCGTGCTCTTGATCATCATTTTCATCTGCAGCCTCATTTCATTAAAGCTGTCTGGATCT
TTTAAAAAGGAGGGCTATTA

Downstream 100 bases:

>100_bases
TCCACTATATATCATCTTGAAAGGAATGATTTAACATGACTGTACACAAAGCGAAGATGACGATTGACAAGGAATATAAG
GTGGCAGAGATTGATAAGCG

Product: AraQ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 280

Protein sequence:

>280_residues
MRPAGGLNIAKVALFLLFAILSFLFVFPLFCLVLGSLKPSSELLRFGLNLKLSPEILSLDNYTYLFNGGSIYFQWFSNSL
ILVVISTVLTLLFSSMVGYGLAVYDFKGKNLLFVAVLLIMMVPIEILMLPLFKMTVSLHIVDTYAGVILPFIVSPVAVFF
FRQYALGLPRDLLDSARMDGCTEFGIYFRIMAPLMKPAFGAMIILQSLNSWNNFLWPLIVLRSKEMFTLPIGLSALLSPY
GNNYDMLISGSVLAILPVILIFLFFQKYFISGLTAGGIKG

Sequences:

>Translated_280_residues
MRPAGGLNIAKVALFLLFAILSFLFVFPLFCLVLGSLKPSSELLRFGLNLKLSPEILSLDNYTYLFNGGSIYFQWFSNSL
ILVVISTVLTLLFSSMVGYGLAVYDFKGKNLLFVAVLLIMMVPIEILMLPLFKMTVSLHIVDTYAGVILPFIVSPVAVFF
FRQYALGLPRDLLDSARMDGCTEFGIYFRIMAPLMKPAFGAMIILQSLNSWNNFLWPLIVLRSKEMFTLPIGLSALLSPY
GNNYDMLISGSVLAILPVILIFLFFQKYFISGLTAGGIKG
>Mature_280_residues
MRPAGGLNIAKVALFLLFAILSFLFVFPLFCLVLGSLKPSSELLRFGLNLKLSPEILSLDNYTYLFNGGSIYFQWFSNSL
ILVVISTVLTLLFSSMVGYGLAVYDFKGKNLLFVAVLLIMMVPIEILMLPLFKMTVSLHIVDTYAGVILPFIVSPVAVFF
FRQYALGLPRDLLDSARMDGCTEFGIYFRIMAPLMKPAFGAMIILQSLNSWNNFLWPLIVLRSKEMFTLPIGLSALLSPY
GNNYDMLISGSVLAILPVILIFLFFQKYFISGLTAGGIKG

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=276, Percent_Identity=29.7101449275362, Blast_Score=118, Evalue=3e-28,
Organism=Escherichia coli, GI1789860, Length=198, Percent_Identity=26.7676767676768, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1790464, Length=213, Percent_Identity=25.3521126760563, Blast_Score=78, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31157; Mature: 31157

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPAGGLNIAKVALFLLFAILSFLFVFPLFCLVLGSLKPSSELLRFGLNLKLSPEILSLD
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCEECCCEEECC
NYTYLFNGGSIYFQWFSNSLILVVISTVLTLLFSSMVGYGLAVYDFKGKNLLFVAVLLIM
CEEEEEECCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHH
MVPIEILMLPLFKMTVSLHIVDTYAGVILPFIVSPVAVFFFRQYALGLPRDLLDSARMDG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCC
CTEFGIYFRIMAPLMKPAFGAMIILQSLNSWNNFLWPLIVLRSKEMFTLPIGLSALLSPY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHCCC
GNNYDMLISGSVLAILPVILIFLFFQKYFISGLTAGGIKG
CCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MRPAGGLNIAKVALFLLFAILSFLFVFPLFCLVLGSLKPSSELLRFGLNLKLSPEILSLD
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCEECCCEEECC
NYTYLFNGGSIYFQWFSNSLILVVISTVLTLLFSSMVGYGLAVYDFKGKNLLFVAVLLIM
CEEEEEECCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHH
MVPIEILMLPLFKMTVSLHIVDTYAGVILPFIVSPVAVFFFRQYALGLPRDLLDSARMDG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCC
CTEFGIYFRIMAPLMKPAFGAMIILQSLNSWNNFLWPLIVLRSKEMFTLPIGLSALLSPY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHCCC
GNNYDMLISGSVLAILPVILIFLFFQKYFISGLTAGGIKG
CCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9084180; 8969504; 9384377; 10417639 [H]