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The map label for this gene is abfA [H]

Identifier: 52786751

GI number: 52786751

Start: 2905573

End: 2907081

Strand: Reverse

Name: abfA [H]

Synonym: BLi03021

Alternate gene names: 52786751

Gene position: 2907081-2905573 (Counterclockwise)

Preceding gene: 52786752

Following gene: 52786750

Centisome position: 68.85

GC content: 49.11

Gene sequence:

>1509_bases
ATGACTGTACACAAAGCGAAGATGACGATTGACAAGGAATATAAGGTGGCAGAGATTGATAAGCGAATTTACGGCTCCTT
TATCGAGCATCTCGGCAGAGCCGTTTATGAAGGCATTTATGAGCCTGATCATCCTGAAGCTGACGAATCAGGCTTTCGGA
AAGATGTCATTAAACTAGTCAGAGAACTAAAGGTGCCGTTTATCAGGTATCCCGGCGGAAACTTTGTATCTGGATATAAC
TGGGAGGATGGAGTCGGACCTGTCGAACAGCGGCCGACAAGACTTGATTTGGCGTGGGCGACAACCGAGCCGAACTTAAT
CGGTACGAACGAATTTATGGATTGGGCAAAGCTTGTCGGGGCAGAGGTGAATATGGCCGTCAACCTCGGAACGAGAGGAA
TTGATGCCGCACGCAACCTAGTAGAATATTGCAACCATCCGTCAGGATCGTACTACAGCGACTTGAGAAAATCCCACGGA
TATAAGGAACCGCATAAAATTAAAACATGGTGCCTCGGCAATGAAATGGACGGTCCATGGCAAATCGGCCATAAAACAGC
GGCCGAATACGGAAGACTTGCTGCTGAAGCCGCGAAGGTGATGAAATGGACGGACCCGTCGATCGAGCTTGTCGCCTGCG
GAAGTTCGGGAAGCGGAATGCCGACATTCATCGACTGGGAAACGACCGTGCTTGACCATACGTACGAACACGTCGAGTAC
ATCTCGCTTCACTCGTATTACGGCAACCGCGACAATGATCTTCCAAACTATTTGGCGAGATCGCTAGACATGGATCACTT
TATCAAAACGGTCATCTCAGTCTGCGACTATATGAAAGCGAAAAAGAAAAGCAAGAAAACGATTCACCTTTCATATGATG
AGTGGAATGTCTGGTATCACTCGAATGAAAAAGACAAAGAAGCTGAACGCTGGGCGAAAGCGCCGCACCTTCTTGAAGAC
ATCTACAACTTTGAGGATGCGCTTCTCGTCGGCTGTATGCTGATTACGATGCTCAAGCATGCCGACCGCGTGAAAATCGC
CTGTCTGGCTCAGCTTGTCAATGTCATCGCGCCGATTATGACAGACAAAGGGGGAGAAGCATGGCGTCAGACCATTTTCT
ATCCGTTTATGCACGCTTCCGTCTACGGCAGAGGAACGGTACTGCAGACGGCGGTATCGTCTCCAAAGTATGATGCGAAA
GACTTTACGGATGTGCCGTACTTGGAGTCCGTGTCTGTTTTCAATGAAGAAGCCGAGGAATTAACCGTTTTTGCCGTCAA
CCGCGCAACAGACGCCGGCCTTGAAATGGAAGCCGATATGAGAAGCTTTGAAGGGTACAGTGTCTCTGAGCACATCGTTC
TGGAACACGAAGATCATAAAGCGACGAATGAAAAAGACCGCAACAACGTCGTTCCGCACAGCGGCGGAGACGCCAAAGTA
TGTGACGGCAGGCTGACGGCTCACCTTCCGAAGCTTTCCTGGAATGTGATCAGAATGAAGAAACAATGA

Upstream 100 bases:

>100_bases
TCATCTTCCTGTTCTTCCAGAAGTACTTTATATCAGGTTTGACGGCGGGCGGAATCAAAGGCTGATCCACTATATATCAT
CTTGAAAGGAATGATTTAAC

Downstream 100 bases:

>100_bases
TTGAAAAACCGGCCCGAAGAGGCCGGTTTTTTCAGATGAAAAAAAGGCTTCAGCAAATATGCCGAAGAATAAGTTAAAAC
GGGAGGAGGATTTATGAAGA

Product: AbfA

Products: NA

Alternate protein names: Arabinosidase [H]

Number of amino acids: Translated: 502; Mature: 501

Protein sequence:

>502_residues
MTVHKAKMTIDKEYKVAEIDKRIYGSFIEHLGRAVYEGIYEPDHPEADESGFRKDVIKLVRELKVPFIRYPGGNFVSGYN
WEDGVGPVEQRPTRLDLAWATTEPNLIGTNEFMDWAKLVGAEVNMAVNLGTRGIDAARNLVEYCNHPSGSYYSDLRKSHG
YKEPHKIKTWCLGNEMDGPWQIGHKTAAEYGRLAAEAAKVMKWTDPSIELVACGSSGSGMPTFIDWETTVLDHTYEHVEY
ISLHSYYGNRDNDLPNYLARSLDMDHFIKTVISVCDYMKAKKKSKKTIHLSYDEWNVWYHSNEKDKEAERWAKAPHLLED
IYNFEDALLVGCMLITMLKHADRVKIACLAQLVNVIAPIMTDKGGEAWRQTIFYPFMHASVYGRGTVLQTAVSSPKYDAK
DFTDVPYLESVSVFNEEAEELTVFAVNRATDAGLEMEADMRSFEGYSVSEHIVLEHEDHKATNEKDRNNVVPHSGGDAKV
CDGRLTAHLPKLSWNVIRMKKQ

Sequences:

>Translated_502_residues
MTVHKAKMTIDKEYKVAEIDKRIYGSFIEHLGRAVYEGIYEPDHPEADESGFRKDVIKLVRELKVPFIRYPGGNFVSGYN
WEDGVGPVEQRPTRLDLAWATTEPNLIGTNEFMDWAKLVGAEVNMAVNLGTRGIDAARNLVEYCNHPSGSYYSDLRKSHG
YKEPHKIKTWCLGNEMDGPWQIGHKTAAEYGRLAAEAAKVMKWTDPSIELVACGSSGSGMPTFIDWETTVLDHTYEHVEY
ISLHSYYGNRDNDLPNYLARSLDMDHFIKTVISVCDYMKAKKKSKKTIHLSYDEWNVWYHSNEKDKEAERWAKAPHLLED
IYNFEDALLVGCMLITMLKHADRVKIACLAQLVNVIAPIMTDKGGEAWRQTIFYPFMHASVYGRGTVLQTAVSSPKYDAK
DFTDVPYLESVSVFNEEAEELTVFAVNRATDAGLEMEADMRSFEGYSVSEHIVLEHEDHKATNEKDRNNVVPHSGGDAKV
CDGRLTAHLPKLSWNVIRMKKQ
>Mature_501_residues
TVHKAKMTIDKEYKVAEIDKRIYGSFIEHLGRAVYEGIYEPDHPEADESGFRKDVIKLVRELKVPFIRYPGGNFVSGYNW
EDGVGPVEQRPTRLDLAWATTEPNLIGTNEFMDWAKLVGAEVNMAVNLGTRGIDAARNLVEYCNHPSGSYYSDLRKSHGY
KEPHKIKTWCLGNEMDGPWQIGHKTAAEYGRLAAEAAKVMKWTDPSIELVACGSSGSGMPTFIDWETTVLDHTYEHVEYI
SLHSYYGNRDNDLPNYLARSLDMDHFIKTVISVCDYMKAKKKSKKTIHLSYDEWNVWYHSNEKDKEAERWAKAPHLLEDI
YNFEDALLVGCMLITMLKHADRVKIACLAQLVNVIAPIMTDKGGEAWRQTIFYPFMHASVYGRGTVLQTAVSSPKYDAKD
FTDVPYLESVSVFNEEAEELTVFAVNRATDAGLEMEADMRSFEGYSVSEHIVLEHEDHKATNEKDRNNVVPHSGGDAKVC
DGRLTAHLPKLSWNVIRMKKQ

Specific function: Unknown

COG id: COG3534

COG function: function code G; Alpha-L-arabinofuranosidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 51 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010720
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF06964 Alpha-L-AF_C [H]

EC number: =3.2.1.55 [H]

Molecular weight: Translated: 57050; Mature: 56919

Theoretical pI: Translated: 6.06; Mature: 6.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVHKAKMTIDKEYKVAEIDKRIYGSFIEHLGRAVYEGIYEPDHPEADESGFRKDVIKLV
CCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
RELKVPFIRYPGGNFVSGYNWEDGVGPVEQRPTRLDLAWATTEPNLIGTNEFMDWAKLVG
HHHCCCEEECCCCCCCCCCCCCCCCCCHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHC
AEVNMAVNLGTRGIDAARNLVEYCNHPSGSYYSDLRKSHGYKEPHKIKTWCLGNEMDGPW
CCEEEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCH
QIGHKTAAEYGRLAAEAAKVMKWTDPSIELVACGSSGSGMPTFIDWETTVLDHTYEHVEY
HHCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEECCHHHHHHHHHHHHHH
ISLHSYYGNRDNDLPNYLARSLDMDHFIKTVISVCDYMKAKKKSKKTIHLSYDEWNVWYH
HEEEHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEEEC
SNEKDKEAERWAKAPHLLEDIYNFEDALLVGCMLITMLKHADRVKIACLAQLVNVIAPIM
CCCCHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
TDKGGEAWRQTIFYPFMHASVYGRGTVLQTAVSSPKYDAKDFTDVPYLESVSVFNEEAEE
CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCE
LTVFAVNRATDAGLEMEADMRSFEGYSVSEHIVLEHEDHKATNEKDRNNVVPHSGGDAKV
EEEEEEECCCCCCCEEHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEE
CDGRLTAHLPKLSWNVIRMKKQ
ECCCHHHCCCCCCEEEEEEECC
>Mature Secondary Structure 
TVHKAKMTIDKEYKVAEIDKRIYGSFIEHLGRAVYEGIYEPDHPEADESGFRKDVIKLV
CCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
RELKVPFIRYPGGNFVSGYNWEDGVGPVEQRPTRLDLAWATTEPNLIGTNEFMDWAKLVG
HHHCCCEEECCCCCCCCCCCCCCCCCCHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHC
AEVNMAVNLGTRGIDAARNLVEYCNHPSGSYYSDLRKSHGYKEPHKIKTWCLGNEMDGPW
CCEEEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCH
QIGHKTAAEYGRLAAEAAKVMKWTDPSIELVACGSSGSGMPTFIDWETTVLDHTYEHVEY
HHCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEECCHHHHHHHHHHHHHH
ISLHSYYGNRDNDLPNYLARSLDMDHFIKTVISVCDYMKAKKKSKKTIHLSYDEWNVWYH
HEEEHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEEEC
SNEKDKEAERWAKAPHLLEDIYNFEDALLVGCMLITMLKHADRVKIACLAQLVNVIAPIM
CCCCHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
TDKGGEAWRQTIFYPFMHASVYGRGTVLQTAVSSPKYDAKDFTDVPYLESVSVFNEEAEE
CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCE
LTVFAVNRATDAGLEMEADMRSFEGYSVSEHIVLEHEDHKATNEKDRNNVVPHSGGDAKV
EEEEEEECCCCCCCEEHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEE
CDGRLTAHLPKLSWNVIRMKKQ
ECCCHHHCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7887599 [H]