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The map label for this gene is araP [H]

Identifier: 52786753

GI number: 52786753

Start: 2907959

End: 2908903

Strand: Reverse

Name: araP [H]

Synonym: BLi03023

Alternate gene names: 52786753

Gene position: 2908903-2907959 (Counterclockwise)

Preceding gene: 52786754

Following gene: 52786752

Centisome position: 68.89

GC content: 44.44

Gene sequence:

>945_bases
TTGAAGACTGTTAAAACAGATACAGTGCATTCGTTTCCGCCGGTGAGCAGAAAAAGAAAGATCAGACGTTTATTATATTC
AGCAAAAGCCGCACCCTACATTTTTACAGCACCTTTTGTACTCTCCTTTTGCATATTTTTTCTTTATCCGCTTATCAGCG
TCGTCATCATGAGTTTTCAAAGCATTCTCCCCGGGGAAGTCCGCTTCATCGGGACGGAGAACTATAAAGCATTAAACAAT
CCTACATTTTATACCGCACTATTCAACACCGTAAAATACACCTTTTGGACATTGCTGATTTTAATACCTGTTCCTCTTAT
TCTGGCAGTCTTTTTAGATTCTAAACTCGTAAAGTTTAAAAACGTGTTCAAATCGGCTTTATTCATCCCGGCTCTGACTT
CAACCATTGTGGCGGGGATTATTTTCAGGCTGATTTTTGGAGAAATGGATACATCCCTGGCGAATTCGATATTGGCTAAG
CTCGGAGGTTCGCCGTACAACTGGCTGAACAATGAACATACCGGCATGTTTTTAATGGTGATGCTCGCATCTTGGAGATG
GATGGGGATCAATGTCCTGTACTTTTTGGCGGGCTTGCAGAACGTTCCGAAAGAATTGTATGAAGCTGCCGAAATCGACG
GGGCAGGCACGTTCAAGAAGTTTTACCATATTACGCTTCCGTTTTTAAAGCCCGTCAGCGTCTACGTGCTGACGATCAGC
ATCATCGGCGGCTTCCGGATGTTTGAAGAAAGCTACGTGCTGTGGCAGAACAACTCTCCGGGCAACATCGGCCTGACGAT
GGTCGGATACATTTATCAGCAGGGGCTTGCCTACAACAACATGGGCTACGGATCGGCGCTCGGCATCGTGCTCTTGATCA
TCATTTTCATCTGCAGCCTCATTTCATTAAAGCTGTCTGGATCTTTTAAAAAGGAGGGCTATTAA

Upstream 100 bases:

>100_bases
GCTCAAAACGAAGAGCAAAACACCGAAAGAAGCATTGGACAAAGCAGCAGCTGAAGTGAAAGGGCAATAGTCTTTCATTA
CTGTAAAGCGAGGCGATAAC

Downstream 100 bases:

>100_bases
TGCGTCCTGCCGGAGGCCTCAACATTGCGAAAGTAGCTCTGTTTCTGCTGTTTGCGATATTAAGCTTTTTGTTTGTGTTT
CCGCTCTTCTGCCTTGTACT

Product: AraP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MKTVKTDTVHSFPPVSRKRKIRRLLYSAKAAPYIFTAPFVLSFCIFFLYPLISVVIMSFQSILPGEVRFIGTENYKALNN
PTFYTALFNTVKYTFWTLLILIPVPLILAVFLDSKLVKFKNVFKSALFIPALTSTIVAGIIFRLIFGEMDTSLANSILAK
LGGSPYNWLNNEHTGMFLMVMLASWRWMGINVLYFLAGLQNVPKELYEAAEIDGAGTFKKFYHITLPFLKPVSVYVLTIS
IIGGFRMFEESYVLWQNNSPGNIGLTMVGYIYQQGLAYNNMGYGSALGIVLLIIIFICSLISLKLSGSFKKEGY

Sequences:

>Translated_314_residues
MKTVKTDTVHSFPPVSRKRKIRRLLYSAKAAPYIFTAPFVLSFCIFFLYPLISVVIMSFQSILPGEVRFIGTENYKALNN
PTFYTALFNTVKYTFWTLLILIPVPLILAVFLDSKLVKFKNVFKSALFIPALTSTIVAGIIFRLIFGEMDTSLANSILAK
LGGSPYNWLNNEHTGMFLMVMLASWRWMGINVLYFLAGLQNVPKELYEAAEIDGAGTFKKFYHITLPFLKPVSVYVLTIS
IIGGFRMFEESYVLWQNNSPGNIGLTMVGYIYQQGLAYNNMGYGSALGIVLLIIIFICSLISLKLSGSFKKEGY
>Mature_314_residues
MKTVKTDTVHSFPPVSRKRKIRRLLYSAKAAPYIFTAPFVLSFCIFFLYPLISVVIMSFQSILPGEVRFIGTENYKALNN
PTFYTALFNTVKYTFWTLLILIPVPLILAVFLDSKLVKFKNVFKSALFIPALTSTIVAGIIFRLIFGEMDTSLANSILAK
LGGSPYNWLNNEHTGMFLMVMLASWRWMGINVLYFLAGLQNVPKELYEAAEIDGAGTFKKFYHITLPFLKPVSVYVLTIS
IIGGFRMFEESYVLWQNNSPGNIGLTMVGYIYQQGLAYNNMGYGSALGIVLLIIIFICSLISLKLSGSFKKEGY

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789861, Length=289, Percent_Identity=26.2975778546713, Blast_Score=110, Evalue=9e-26,
Organism=Escherichia coli, GI1787570, Length=265, Percent_Identity=30.188679245283, Blast_Score=104, Evalue=8e-24,
Organism=Escherichia coli, GI1790465, Length=232, Percent_Identity=25, Blast_Score=75, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 35370; Mature: 35370

Theoretical pI: Translated: 10.00; Mature: 10.00

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTVKTDTVHSFPPVSRKRKIRRLLYSAKAAPYIFTAPFVLSFCIFFLYPLISVVIMSFQ
CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHH
SILPGEVRFIGTENYKALNNPTFYTALFNTVKYTFWTLLILIPVPLILAVFLDSKLVKFK
HHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NVFKSALFIPALTSTIVAGIIFRLIFGEMDTSLANSILAKLGGSPYNWLNNEHTGMFLMV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
MLASWRWMGINVLYFLAGLQNVPKELYEAAEIDGAGTFKKFYHITLPFLKPVSVYVLTIS
HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHH
IIGGFRMFEESYVLWQNNSPGNIGLTMVGYIYQQGLAYNNMGYGSALGIVLLIIIFICSL
HHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
ISLKLSGSFKKEGY
HHHHHCCCCCCCCC
>Mature Secondary Structure
MKTVKTDTVHSFPPVSRKRKIRRLLYSAKAAPYIFTAPFVLSFCIFFLYPLISVVIMSFQ
CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHH
SILPGEVRFIGTENYKALNNPTFYTALFNTVKYTFWTLLILIPVPLILAVFLDSKLVKFK
HHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NVFKSALFIPALTSTIVAGIIFRLIFGEMDTSLANSILAKLGGSPYNWLNNEHTGMFLMV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
MLASWRWMGINVLYFLAGLQNVPKELYEAAEIDGAGTFKKFYHITLPFLKPVSVYVLTIS
HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHH
IIGGFRMFEESYVLWQNNSPGNIGLTMVGYIYQQGLAYNNMGYGSALGIVLLIIIFICSL
HHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
ISLKLSGSFKKEGY
HHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9084180; 8969504; 9384377; 10417639 [H]