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The map label for this gene is yqiC

Identifier: 52786338

GI number: 52786338

Start: 2520674

End: 2520934

Strand: Reverse

Name: yqiC

Synonym: BLi02600

Alternate gene names: 52786338

Gene position: 2520934-2520674 (Counterclockwise)

Preceding gene: 52786339

Following gene: 52786337

Centisome position: 59.7

GC content: 45.21

Gene sequence:

>261_bases
ATGGCTGAAGAAAACAAAACAAACCGGGATGACCTGACATTTGAAGAGGCGATGAAAGGTTTGGAACAGATCGTATCAAA
GCTTGAAGAAGGGGACGTGCCTTTGGAAAAGGCGATCGACTATTTCCAGGAGGGGATGGCTCTTTCGAAAATATGCCACG
AAAAACTGCAAAATGTCGAAAAACAGATGGACTTCATTTTGCGGGAAAACGGGGAATTAGCTCCTTTCAGTGTTCGGGAG
GAGGAAAAAGGTGACCGGTAA

Upstream 100 bases:

>100_bases
ATTAAAAGTATTGAACAGGTTCATGAAAAAGACGAGATCCGCGTCACATTAAACGATGGGACGCTGACCTGTGAGGTACT
GCAAAAGAGAGGCGAAACAA

Downstream 100 bases:

>100_bases
ACTTGAAGGATTTTTAAAATCGAGAAAAACAGTAATTGAAGAGCGCCTTCCGATGTATATTAAAGACTTGCAAGCGCCGT
CCATCCTCAAGGAATCCATG

Product: exodeoxyribonuclease VII small subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit

Number of amino acids: Translated: 86; Mature: 85

Protein sequence:

>86_residues
MAEENKTNRDDLTFEEAMKGLEQIVSKLEEGDVPLEKAIDYFQEGMALSKICHEKLQNVEKQMDFILRENGELAPFSVRE
EEKGDR

Sequences:

>Translated_86_residues
MAEENKTNRDDLTFEEAMKGLEQIVSKLEEGDVPLEKAIDYFQEGMALSKICHEKLQNVEKQMDFILRENGELAPFSVRE
EEKGDR
>Mature_85_residues
AEENKTNRDDLTFEEAMKGLEQIVSKLEEGDVPLEKAIDYFQEGMALSKICHEKLQNVEKQMDFILRENGELAPFSVREE
EKGDR

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides

COG id: COG1722

COG function: function code L; Exonuclease VII small subunit

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family

Homologues:

Organism=Escherichia coli, GI1786624, Length=74, Percent_Identity=40.5405405405405, Blast_Score=61, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): EX7S_BACLD (Q65HJ0)

Other databases:

- EMBL:   AE017333
- EMBL:   CP000002
- RefSeq:   YP_079753.1
- RefSeq:   YP_092167.1
- ProteinModelPortal:   Q65HJ0
- SMR:   Q65HJ0
- STRING:   Q65HJ0
- EnsemblBacteria:   EBBACT00000054439
- EnsemblBacteria:   EBBACT00000059686
- GeneID:   3029262
- GeneID:   3100170
- GenomeReviews:   AE017333_GR
- GenomeReviews:   CP000002_GR
- KEGG:   bld:BLi02600
- KEGG:   bli:BL01525
- NMPDR:   fig|279010.5.peg.445
- eggNOG:   COG1722
- GeneTree:   EBGT00050000002908
- HOGENOM:   HBG728416
- OMA:   VEANLEE
- ProtClustDB:   PRK14063
- BioCyc:   BLIC279010-1:BLI02600-MONOMER
- BioCyc:   BLIC279010:BL01525-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00337
- InterPro:   IPR003761
- PIRSF:   PIRSF006488
- ProDom:   PD028235
- TIGRFAMs:   TIGR01280

Pfam domain/function: PF02609 Exonuc_VII_S

EC number: =3.1.11.6

Molecular weight: Translated: 9963; Mature: 9832

Theoretical pI: Translated: 4.22; Mature: 4.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEENKTNRDDLTFEEAMKGLEQIVSKLEEGDVPLEKAIDYFQEGMALSKICHEKLQNVE
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
KQMDFILRENGELAPFSVREEEKGDR
HHHHHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AEENKTNRDDLTFEEAMKGLEQIVSKLEEGDVPLEKAIDYFQEGMALSKICHEKLQNVE
CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
KQMDFILRENGELAPFSVREEEKGDR
HHHHHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA