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The map label for this gene is yqiD [H]

Identifier: 52786337

GI number: 52786337

Start: 2519794

End: 2520684

Strand: Reverse

Name: yqiD [H]

Synonym: BLi02599

Alternate gene names: 52786337

Gene position: 2520684-2519794 (Counterclockwise)

Preceding gene: 52786338

Following gene: 52786336

Centisome position: 59.69

GC content: 47.92

Gene sequence:

>891_bases
GTGACCGGTAAACTTGAAGGATTTTTAAAATCGAGAAAAACAGTAATTGAAGAGCGCCTTCCGATGTATATTAAAGACTT
GCAAGCGCCGTCCATCCTCAAGGAATCCATGCTGTACTCATTGGAAGCCGGGGGGAAACGGCTGAGACCGATATTGGTTC
TTGCGCTTCTTCATGCGTACGGAAAAGACGAAGAAGCCGGAATTCCAGTCGGATGCGCGGTTGAAATGATCCATACGTAT
TCATTAATCCATGACGACCTCCCTTGTATGGATGACGATGACCTCAGAAGAGGTAAGCCGACAAACCACAAAATTTACGG
GGAGGCGACGGCCATTCTCGCGGGAGACGCCTTATTAACCGAAAGCTTCAAAATGATCACTTCCAATATGCCTTCTGATG
TATCCGCTGAAAAGCGCATCAGACTGGTGAACGAGCTGATTTCGGCAGCGGGGGCCGAAGGCATGGTCGGCGGTCAGATT
TTAGATATGGAAGCGGAATCAAAGTCTGTATCTCTTGATGAACTGCAGCGAATCCACGAAGGAAAAACGGCTAAACTCCT
CAGCTTCAGCGTCATTGCGGGAGCCATTCTTGCAGATGCATCTGAAAAAGAGATCGAAAAGCTGCGCGAATTCAGCCATC
ATATCGGCATCGGCTTTCAGATCAGAGATGACATTTTGGACCTTGAAGGCTCGGAGGATAAGATCGGCAAACGGATCGGA
TCCGACGCTTCAAACGGAAAGTCGACGTATCCGTCGCTCCTTTCGCTTGAGGGCGCCAGCCAAAAACTTGATGAACATAT
TGAAAAAGCAAAACAGCTGATTTCAGAGCTTCCGCTTGAAAAAGAGCTTATGTACGAGTTCTGCGATATGATTGCCGCTA
GGGATCATTGA

Upstream 100 bases:

>100_bases
ATATGCCACGAAAAACTGCAAAATGTCGAAAAACAGATGGACTTCATTTTGCGGGAAAACGGGGAATTAGCTCCTTTCAG
TGTTCGGGAGGAGGAAAAAG

Downstream 100 bases:

>100_bases
TACAGGGCTTCCATTTGAGCATCAAAGGCTTATTGTGATAAAATGTAGAGAGTTGAACTCTAAAACGCCGCGCCGTTATC
ACGTTGTGTTAGCGGCTGTT

Product: YqiD

Products: NA

Alternate protein names: FPP synthase; (2E,6E)-farnesyl diphosphate synthase; Geranyltranstransferase [H]

Number of amino acids: Translated: 296; Mature: 295

Protein sequence:

>296_residues
MTGKLEGFLKSRKTVIEERLPMYIKDLQAPSILKESMLYSLEAGGKRLRPILVLALLHAYGKDEEAGIPVGCAVEMIHTY
SLIHDDLPCMDDDDLRRGKPTNHKIYGEATAILAGDALLTESFKMITSNMPSDVSAEKRIRLVNELISAAGAEGMVGGQI
LDMEAESKSVSLDELQRIHEGKTAKLLSFSVIAGAILADASEKEIEKLREFSHHIGIGFQIRDDILDLEGSEDKIGKRIG
SDASNGKSTYPSLLSLEGASQKLDEHIEKAKQLISELPLEKELMYEFCDMIAARDH

Sequences:

>Translated_296_residues
MTGKLEGFLKSRKTVIEERLPMYIKDLQAPSILKESMLYSLEAGGKRLRPILVLALLHAYGKDEEAGIPVGCAVEMIHTY
SLIHDDLPCMDDDDLRRGKPTNHKIYGEATAILAGDALLTESFKMITSNMPSDVSAEKRIRLVNELISAAGAEGMVGGQI
LDMEAESKSVSLDELQRIHEGKTAKLLSFSVIAGAILADASEKEIEKLREFSHHIGIGFQIRDDILDLEGSEDKIGKRIG
SDASNGKSTYPSLLSLEGASQKLDEHIEKAKQLISELPLEKELMYEFCDMIAARDH
>Mature_295_residues
TGKLEGFLKSRKTVIEERLPMYIKDLQAPSILKESMLYSLEAGGKRLRPILVLALLHAYGKDEEAGIPVGCAVEMIHTYS
LIHDDLPCMDDDDLRRGKPTNHKIYGEATAILAGDALLTESFKMITSNMPSDVSAEKRIRLVNELISAAGAEGMVGGQIL
DMEAESKSVSLDELQRIHEGKTAKLLSFSVIAGAILADASEKEIEKLREFSHHIGIGFQIRDDILDLEGSEDKIGKRIGS
DASNGKSTYPSLLSLEGASQKLDEHIEKAKQLISELPLEKELMYEFCDMIAARDH

Specific function: Unknown

COG id: COG0142

COG function: function code H; Geranylgeranyl pyrophosphate synthase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FPP/GGPP synthase family [H]

Homologues:

Organism=Homo sapiens, GI50659086, Length=235, Percent_Identity=31.063829787234, Blast_Score=91, Evalue=1e-18,
Organism=Escherichia coli, GI1786623, Length=266, Percent_Identity=47.3684210526316, Blast_Score=196, Evalue=2e-51,
Organism=Escherichia coli, GI1789578, Length=233, Percent_Identity=29.1845493562232, Blast_Score=123, Evalue=2e-29,
Organism=Caenorhabditis elegans, GI17505681, Length=292, Percent_Identity=27.3972602739726, Blast_Score=98, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI17508563, Length=270, Percent_Identity=26.2962962962963, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24651612, Length=227, Percent_Identity=29.9559471365639, Blast_Score=90, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000092
- InterPro:   IPR008949 [H]

Pfam domain/function: PF00348 polyprenyl_synt [H]

EC number: =2.5.1.10 [H]

Molecular weight: Translated: 32596; Mature: 32465

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: PS00723 POLYPRENYL_SYNTHET_1 ; PS00444 POLYPRENYL_SYNTHET_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGKLEGFLKSRKTVIEERLPMYIKDLQAPSILKESMLYSLEAGGKRLRPILVLALLHAY
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
GKDEEAGIPVGCAVEMIHTYSLIHDDLPCMDDDDLRRGKPTNHKIYGEATAILAGDALLT
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCEEECCHHHHHCCHHHHH
ESFKMITSNMPSDVSAEKRIRLVNELISAAGAEGMVGGQILDMEAESKSVSLDELQRIHE
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCHHHHHHHHC
GKTAKLLSFSVIAGAILADASEKEIEKLREFSHHIGIGFQIRDDILDLEGSEDKIGKRIG
CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEHHHHHCCCCCHHHHHHHHC
SDASNGKSTYPSLLSLEGASQKLDEHIEKAKQLISELPLEKELMYEFCDMIAARDH
CCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TGKLEGFLKSRKTVIEERLPMYIKDLQAPSILKESMLYSLEAGGKRLRPILVLALLHAY
CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
GKDEEAGIPVGCAVEMIHTYSLIHDDLPCMDDDDLRRGKPTNHKIYGEATAILAGDALLT
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCEEECCHHHHHCCHHHHH
ESFKMITSNMPSDVSAEKRIRLVNELISAAGAEGMVGGQILDMEAESKSVSLDELQRIHE
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCHHHHHHHHC
GKTAKLLSFSVIAGAILADASEKEIEKLREFSHHIGIGFQIRDDILDLEGSEDKIGKRIG
CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEHHHHHCCCCCHHHHHHHHC
SDASNGKSTYPSLLSLEGASQKLDEHIEKAKQLISELPLEKELMYEFCDMIAARDH
CCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]