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The map label for this gene is ypdA [H]

Identifier: 52786176

GI number: 52786176

Start: 2372125

End: 2373120

Strand: Reverse

Name: ypdA [H]

Synonym: BLi02434

Alternate gene names: 52786176

Gene position: 2373120-2372125 (Counterclockwise)

Preceding gene: 52786177

Following gene: 52786175

Centisome position: 56.2

GC content: 43.67

Gene sequence:

>996_bases
TTGCCGGATATGACAGGAGATGAACGGAACATGAAAGAAGAAAAAGTGATCATTATCGGCGGCGGCCCCTGCGGGCTTTC
AGCAGCTATTCACATGCAAGAGATCGGAATAGATGCACTCGTCATTGAGAAAGGAAACATCGTCAACAGCATTTATCAAT
ATCCTACTCACCAAACCTTTTTCAGCTCAAGCGAAAAACTGGAGATTGGCGATGTGGCTTTTATTACTGAAAATCACAAG
CCGGTCAGAAATCAGGCGCTTTCTTATTACAGGGAAGTCGCCAAACGAAAAAATCTACGGATCAACGCGTTTGAGAAAGT
TCAATCCGTAACAAAAACAGAGAATAACCAATTTATCGTGGAAACATCAAAGGACACGTATTTGTCTTCTTTTTGCATTG
TCGCAACGGGATATTATGACAATCCGAACTATATGAATGTACCGGGAGAAGACCTTCCAAAAGTATTTCATTATTTTAAA
GAGGCTCATCCGTACTTTGATAAAGATGTTGCAGTTATCGGGGGCAAAAACTCAAGCGTCGACGCGGCAATGGAGCTCGT
TAAGGCGGGCGCAAGAGTGACCGTATTGTACAGAGGGAACGAATATTCCTCCAGCATCAAACCGTGGATCCTTCCGGAAT
TCCTTTCGCTTGTCAAGCACGGAAAAATCAGAATGGAATTCCGGGCGGTCGTCAAAGAAATTACGGAAGACGAGCTGATT
TTTTCTGTCGACGGAAAAGAAACCAGGATCAAAAATGATTTTGTATTTGCCATGACCGGCTATCATCCAGATCATAGCTT
TCTTCAAAAAATGGGAGTCAAAATCGACGCAGAGTCGGGCCGTCCTTTCTTTAATGAAGAAACGATGGAGACGAACGAAG
AAGGCATCTTTATCGCCGGCGTTATTGCGGCCGGGAACAACGCAAATGAAATCTTTATTGAAAACGGCCGTTTTCACGGC
GGCTTAATCGCAGCTGAAATTGCTAAACGGATATAA

Upstream 100 bases:

>100_bases
GCAAGATGGCGGAAGCATCCCGCTTCAGAGGCTGGATATAGGCTCAAACATTTGCAACAACCCAAAAAATCTCCTATCAT
AAAATAGGAGATTTTTTGAT

Downstream 100 bases:

>100_bases
AAACCGGATGTTTTATGATTTGTATCAGGCAAAAGAGAGCATATTCTATATATAGATGTGCTCTCTTTTTTATCGGCACA
CAGATCAACGCGAAAAGGGG

Product: YpdA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 330

Protein sequence:

>331_residues
MPDMTGDERNMKEEKVIIIGGGPCGLSAAIHMQEIGIDALVIEKGNIVNSIYQYPTHQTFFSSSEKLEIGDVAFITENHK
PVRNQALSYYREVAKRKNLRINAFEKVQSVTKTENNQFIVETSKDTYLSSFCIVATGYYDNPNYMNVPGEDLPKVFHYFK
EAHPYFDKDVAVIGGKNSSVDAAMELVKAGARVTVLYRGNEYSSSIKPWILPEFLSLVKHGKIRMEFRAVVKEITEDELI
FSVDGKETRIKNDFVFAMTGYHPDHSFLQKMGVKIDAESGRPFFNEETMETNEEGIFIAGVIAAGNNANEIFIENGRFHG
GLIAAEIAKRI

Sequences:

>Translated_331_residues
MPDMTGDERNMKEEKVIIIGGGPCGLSAAIHMQEIGIDALVIEKGNIVNSIYQYPTHQTFFSSSEKLEIGDVAFITENHK
PVRNQALSYYREVAKRKNLRINAFEKVQSVTKTENNQFIVETSKDTYLSSFCIVATGYYDNPNYMNVPGEDLPKVFHYFK
EAHPYFDKDVAVIGGKNSSVDAAMELVKAGARVTVLYRGNEYSSSIKPWILPEFLSLVKHGKIRMEFRAVVKEITEDELI
FSVDGKETRIKNDFVFAMTGYHPDHSFLQKMGVKIDAESGRPFFNEETMETNEEGIFIAGVIAAGNNANEIFIENGRFHG
GLIAAEIAKRI
>Mature_330_residues
PDMTGDERNMKEEKVIIIGGGPCGLSAAIHMQEIGIDALVIEKGNIVNSIYQYPTHQTFFSSSEKLEIGDVAFITENHKP
VRNQALSYYREVAKRKNLRINAFEKVQSVTKTENNQFIVETSKDTYLSSFCIVATGYYDNPNYMNVPGEDLPKVFHYFKE
AHPYFDKDVAVIGGKNSSVDAAMELVKAGARVTVLYRGNEYSSSIKPWILPEFLSLVKHGKIRMEFRAVVKEITEDELIF
SVDGKETRIKNDFVFAMTGYHPDHSFLQKMGVKIDAESGRPFFNEETMETNEEGIFIAGVIAAGNNANEIFIENGRFHGG
LIAAEIAKRI

Specific function: Unknown

COG id: COG0492

COG function: function code O; Thioredoxin reductase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013027
- InterPro:   IPR001327
- InterPro:   IPR000103 [H]

Pfam domain/function: PF00070 Pyr_redox; PF07992 Pyr_redox_2 [H]

EC number: NA

Molecular weight: Translated: 37190; Mature: 37058

Theoretical pI: Translated: 5.65; Mature: 5.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDMTGDERNMKEEKVIIIGGGPCGLSAAIHMQEIGIDALVIEKGNIVNSIYQYPTHQTF
CCCCCCCCCCCCCCEEEEECCCCCCCHHEEEHHHCCCEEEEEECCCHHHHHHHCCCCHHH
FSSSEKLEIGDVAFITENHKPVRNQALSYYREVAKRKNLRINAFEKVQSVTKTENNQFIV
HCCCCCEEECEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHCCCCEEEE
ETSKDTYLSSFCIVATGYYDNPNYMNVPGEDLPKVFHYFKEAHPYFDKDVAVIGGKNSSV
EECCCCCCEEEEEEEEEEECCCCEECCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCH
DAAMELVKAGARVTVLYRGNEYSSSIKPWILPEFLSLVKHGKIRMEFRAVVKEITEDELI
HHHHHHHHCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHCCCEEHHHHHHHHHCCCCCEE
FSVDGKETRIKNDFVFAMTGYHPDHSFLQKMGVKIDAESGRPFFNEETMETNEEGIFIAG
EEECCCCEEECCCEEEEEECCCCCHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCEEEEE
VIAAGNNANEIFIENGRFHGGLIAAEIAKRI
EEEECCCCCEEEEECCCCCCCHHHHHHHHCC
>Mature Secondary Structure 
PDMTGDERNMKEEKVIIIGGGPCGLSAAIHMQEIGIDALVIEKGNIVNSIYQYPTHQTF
CCCCCCCCCCCCCEEEEECCCCCCCHHEEEHHHCCCEEEEEECCCHHHHHHHCCCCHHH
FSSSEKLEIGDVAFITENHKPVRNQALSYYREVAKRKNLRINAFEKVQSVTKTENNQFIV
HCCCCCEEECEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHCCCCEEEE
ETSKDTYLSSFCIVATGYYDNPNYMNVPGEDLPKVFHYFKEAHPYFDKDVAVIGGKNSSV
EECCCCCCEEEEEEEEEEECCCCEECCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCH
DAAMELVKAGARVTVLYRGNEYSSSIKPWILPEFLSLVKHGKIRMEFRAVVKEITEDELI
HHHHHHHHCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHCCCEEHHHHHHHHHCCCCCEE
FSVDGKETRIKNDFVFAMTGYHPDHSFLQKMGVKIDAESGRPFFNEETMETNEEGIFIAG
EEECCCCEEECCCEEEEEECCCCCHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCEEEEE
VIAAGNNANEIFIENGRFHGGLIAAEIAKRI
EEEECCCCCEEEEECCCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377 [H]