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The map label for this gene is ypdC

Identifier: 52786174

GI number: 52786174

Start: 2370299

End: 2370967

Strand: Reverse

Name: ypdC

Synonym: BLi02432

Alternate gene names: 52786174

Gene position: 2370967-2370299 (Counterclockwise)

Preceding gene: 52786175

Following gene: 52786173

Centisome position: 56.15

GC content: 43.8

Gene sequence:

>669_bases
ATGTTCGGAATTATCTCAGCAGGCCTAGCTCCCGGAATCGCACTGTTAATGTATTTTTACTTAAAGGAAAAATATGAATC
CGAGCCCATTCATATGGTCATCCGCCTCTTTATACTGGGGGTTTTGCTCGTTTTTCCGACGATGTTCATCCAGTATGTAT
TGGAAAAAGAACACATTTCTGAGGGCAGTTTTGTCGTTTCGTTTTTAACTTCCGGCTTTTTGGAAGAATTTTTAAAATGG
TTTTTGCTGATGGTCAGCACCTTTCAGCATATCGACTTTGATGAACACTATGACGGAATCGTATACGGGACAAGCCTTTC
ATTGGGGTTTGCGACGCTTGAAAATATATTGTACCTCATCGGAAACGGGGTGGAGTACGCCTTTATGCGCGCTTTGCTTC
CGGTTTCCAGCCATGCTTTATTCGGAGTGATCATGGGCTTTTACATCGGCAAAGCCCGTTTTTCGGATAGCAAAACAAAG
ATGAAATGGCTGCTATGCTCGCTTTTTATTCCGGCTTTGCTTCACGGTCTATACGATTATATTCTGCTCGCCTTAAAAAA
CTGGATCTATTTTATGCTGCCCTTTATGGCGTTTCTTTGGTGGTTCGGCTTGCGCAAAGCAAAAAAAGCCCGTTCCGTCA
AAACCGGCGGGCAGCCTCTTCAGCAATAG

Upstream 100 bases:

>100_bases
AAAGACAAATTCTGCTATTAGGCGGCCTGTTCTTTTTCAATTTCAAAACAATCCGAATCATGGTAGGATAGAATGAGATG
AAAAGGAAAGAGGTTTCCTC

Downstream 100 bases:

>100_bases
CCGCCTTGTAAAAGGGCGGTTTTTTTATTTTTCTTGTCAGGCATATTTGCCTAAAGATGAAACAGAAAGGAAAGCGTGTA
TAAAATCTGCCTCGCTACAA

Product: YpdC

Products: NA

Alternate protein names: Protease responsible for activating sigma-W

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MFGIISAGLAPGIALLMYFYLKEKYESEPIHMVIRLFILGVLLVFPTMFIQYVLEKEHISEGSFVVSFLTSGFLEEFLKW
FLLMVSTFQHIDFDEHYDGIVYGTSLSLGFATLENILYLIGNGVEYAFMRALLPVSSHALFGVIMGFYIGKARFSDSKTK
MKWLLCSLFIPALLHGLYDYILLALKNWIYFMLPFMAFLWWFGLRKAKKARSVKTGGQPLQQ

Sequences:

>Translated_222_residues
MFGIISAGLAPGIALLMYFYLKEKYESEPIHMVIRLFILGVLLVFPTMFIQYVLEKEHISEGSFVVSFLTSGFLEEFLKW
FLLMVSTFQHIDFDEHYDGIVYGTSLSLGFATLENILYLIGNGVEYAFMRALLPVSSHALFGVIMGFYIGKARFSDSKTK
MKWLLCSLFIPALLHGLYDYILLALKNWIYFMLPFMAFLWWFGLRKAKKARSVKTGGQPLQQ
>Mature_222_residues
MFGIISAGLAPGIALLMYFYLKEKYESEPIHMVIRLFILGVLLVFPTMFIQYVLEKEHISEGSFVVSFLTSGFLEEFLKW
FLLMVSTFQHIDFDEHYDGIVYGTSLSLGFATLENILYLIGNGVEYAFMRALLPVSSHALFGVIMGFYIGKARFSDSKTK
MKWLLCSLFIPALLHGLYDYILLALKNWIYFMLPFMAFLWWFGLRKAKKARSVKTGGQPLQQ

Specific function: Is responsible for Site-1 cleavage of the RsiW anti- sigma factor. This results, after two other proteolytic steps catalyzed by the RasP and ClpXP proteases, in the release of SigW and the transcription activation of the genes under the control of the sig

COG id: COG2339

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the protease prsW family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PRSW_BACLD (Q65I04)

Other databases:

- EMBL:   AE017333
- EMBL:   CP000002
- RefSeq:   YP_079595.2
- RefSeq:   YP_092003.1
- STRING:   Q65I04
- EnsemblBacteria:   EBBACT00000058337
- EnsemblBacteria:   EBBACT00000060293
- GeneID:   3027335
- GeneID:   3098974
- GenomeReviews:   AE017333_GR
- GenomeReviews:   CP000002_GR
- KEGG:   bld:BLi02432
- KEGG:   bli:BL02223
- NMPDR:   fig|279010.5.peg.280
- eggNOG:   COG2339
- GeneTree:   EBGT00050000001164
- HOGENOM:   HBG549045
- ProtClustDB:   CLSK873083
- BioCyc:   BLIC279010-1:BLI02432-MONOMER
- BioCyc:   BLIC279010:BL02223-MONOMER

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25528; Mature: 25528

Theoretical pI: Translated: 8.82; Mature: 8.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xfee46d8)-; HASH(0x10b4934c)-; HASH(0x10a86888)-; HASH(0x106c7828)-; HASH(0xe1b400c)-;

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFGIISAGLAPGIALLMYFYLKEKYESEPIHMVIRLFILGVLLVFPTMFIQYVLEKEHIS
CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
EGSFVVSFLTSGFLEEFLKWFLLMVSTFQHIDFDEHYDGIVYGTSLSLGFATLENILYLI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHHHHHHH
GNGVEYAFMRALLPVSSHALFGVIMGFYIGKARFSDSKTKMKWLLCSLFIPALLHGLYDY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
ILLALKNWIYFMLPFMAFLWWFGLRKAKKARSVKTGGQPLQQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
>Mature Secondary Structure
MFGIISAGLAPGIALLMYFYLKEKYESEPIHMVIRLFILGVLLVFPTMFIQYVLEKEHIS
CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
EGSFVVSFLTSGFLEEFLKWFLLMVSTFQHIDFDEHYDGIVYGTSLSLGFATLENILYLI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHHHHHHH
GNGVEYAFMRALLPVSSHALFGVIMGFYIGKARFSDSKTKMKWLLCSLFIPALLHGLYDY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
ILLALKNWIYFMLPFMAFLWWFGLRKAKKARSVKTGGQPLQQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA