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The map label for this gene is yocA [H]

Identifier: 52785952

GI number: 52785952

Start: 2163806

End: 2164465

Strand: Direct

Name: yocA [H]

Synonym: BLi02204

Alternate gene names: 52785952

Gene position: 2163806-2164465 (Clockwise)

Preceding gene: 52785951

Following gene: 52785959

Centisome position: 51.24

GC content: 41.52

Gene sequence:

>660_bases
GTGAAACCATTGAAGAAAAAGAAATCAGGATGTTTAGCCGGAGCTGGCTGTTTGTCATTTTTTGTGTTTGTTCCATTGAT
CATTTTCTTTGCCATCTCCGGTCTGGAACAATTAAAATGGCTTCCTCTTGACACTGAATCTAATATTCTTGAGAGATTAA
AAGATTACAAGCCTCTTGTTGAAGAAGAACTCGATAAACAGGGTCTTTCACAATACACCGGTCTTTTATTGGGCATGATG
TATCAAGAGTCAAAAGGCAGAGGCGGTGATCCGATGCAGTCGTCGGAATCTCTCGGCATGAAGCGAAATGAGATTGACGA
TCCAAAAGCAAGCATTAAGCAGGGTGTGCGCCATTTTACAGTAATGTATCAAAAGGGACAGAAAAAAGGCGTCGATATTG
AAACGATTATCCAAAGCTATAATATGGGGGCCGGTTATATCGACTATGTCTCAAAACACGGCGGAAAGCACTCTGAGAAG
CTGGCAAAGGCATTTTCCGAAGAACAAGTCAAAAAGAACCCCGACCTGTACAATTGCGGCGGGGATACAAACAATTTCCG
CTATCCTTATTGCTACGGGGATTACTCTTACACGGAAAAAGTAATGGAACGCACAAAAAAAGTCGAAGAACATATCGAAG
GATTAACACTTGAACATTGA

Upstream 100 bases:

>100_bases
ATCGCGATCCGCGCTAGAATGGTATATCGCTTGGTCTTCTTGTAGAGATATGTCATAATAAATGAGACTGTATACTGTTT
TGCATCAGGGCGCTACAGAG

Downstream 100 bases:

>100_bases
CAAAGCGGCTGGCTGGGTGATTTTTCGCCCGGCTTGTCCTGTTTTGGAGGAGCGAACGAAAGCATCGCCTGCAGACGCAT
GCCATGCTTGTCATCAGTTC

Product: YocA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MKPLKKKKSGCLAGAGCLSFFVFVPLIIFFAISGLEQLKWLPLDTESNILERLKDYKPLVEEELDKQGLSQYTGLLLGMM
YQESKGRGGDPMQSSESLGMKRNEIDDPKASIKQGVRHFTVMYQKGQKKGVDIETIIQSYNMGAGYIDYVSKHGGKHSEK
LAKAFSEEQVKKNPDLYNCGGDTNNFRYPYCYGDYSYTEKVMERTKKVEEHIEGLTLEH

Sequences:

>Translated_219_residues
MKPLKKKKSGCLAGAGCLSFFVFVPLIIFFAISGLEQLKWLPLDTESNILERLKDYKPLVEEELDKQGLSQYTGLLLGMM
YQESKGRGGDPMQSSESLGMKRNEIDDPKASIKQGVRHFTVMYQKGQKKGVDIETIIQSYNMGAGYIDYVSKHGGKHSEK
LAKAFSEEQVKKNPDLYNCGGDTNNFRYPYCYGDYSYTEKVMERTKKVEEHIEGLTLEH
>Mature_219_residues
MKPLKKKKSGCLAGAGCLSFFVFVPLIIFFAISGLEQLKWLPLDTESNILERLKDYKPLVEEELDKQGLSQYTGLLLGMM
YQESKGRGGDPMQSSESLGMKRNEIDDPKASIKQGVRHFTVMYQKGQKKGVDIETIIQSYNMGAGYIDYVSKHGGKHSEK
LAKAFSEEQVKKNPDLYNCGGDTNNFRYPYCYGDYSYTEKVMERTKKVEEHIEGLTLEH

Specific function: Unknown

COG id: COG0741

COG function: function code M; Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24849; Mature: 24849

Theoretical pI: Translated: 7.95; Mature: 7.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPLKKKKSGCLAGAGCLSFFVFVPLIIFFAISGLEQLKWLPLDTESNILERLKDYKPLV
CCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHH
EEELDKQGLSQYTGLLLGMMYQESKGRGGDPMQSSESLGMKRNEIDDPKASIKQGVRHFT
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHH
VMYQKGQKKGVDIETIIQSYNMGAGYIDYVSKHGGKHSEKLAKAFSEEQVKKNPDLYNCG
HHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEECC
GDTNNFRYPYCYGDYSYTEKVMERTKKVEEHIEGLTLEH
CCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKPLKKKKSGCLAGAGCLSFFVFVPLIIFFAISGLEQLKWLPLDTESNILERLKDYKPLV
CCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHH
EEELDKQGLSQYTGLLLGMMYQESKGRGGDPMQSSESLGMKRNEIDDPKASIKQGVRHFT
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHH
VMYQKGQKKGVDIETIIQSYNMGAGYIDYVSKHGGKHSEKLAKAFSEEQVKKNPDLYNCG
HHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEECC
GDTNNFRYPYCYGDYSYTEKVMERTKKVEEHIEGLTLEH
CCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]